RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CLDN11O75508 207 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 ADCY5O95622 1261 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 PRKCSHP14314 528 aaPredicted RBP14.9□□□□□ -0.02
SDC1-204ENST00000429035 JUPP14923 745 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 NOS2P35228 1153 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 PLK1P53350 603 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 SLC6A3Q01959 620 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 BNIP3Q12983 259 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 EIF4EBP2Q13542 120 aaPredicted RBP14.9□□□□□ -0.02
SDC1-204ENST00000429035 SMAD1Q15797 465 aaKnown RBP14.9□□□□□ -0.02
SDC1-204ENST00000429035 HSP90AA4PQ58FG1 418 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 FAM102AQ5T9C2 384 aaPredicted RBP14.9□□□□□ -0.02
SDC1-204ENST00000429035 AGBL4Q5VU57 503 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 TFAP2DQ7Z6R9 452 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 SH2D3CQ8N5H7 860 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 PDCD7Q8N8D1 485 aaKnown RBP14.9□□□□□ -0.02
SDC1-204ENST00000429035 ATP11CQ8NB49 1132 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 SAP25Q8TEE9 199 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 KLK6Q92876 244 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 CCDC114Q96M63 670 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 FEM1AQ9BSK4 669 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 TKTL2Q9H0I9 626 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 DYRK4Q9NR20 520 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 STAP1Q9ULZ2 295 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 FARP1Q9Y4F1 1045 aaPredicted RBP14.9□□□□□ -0.02
SDC1-204ENST00000429035 DOCK4Q8N1I0 1966 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 KNTC1P50748 2209 aa14.9□□□□□ -0.02
SDC1-204ENST00000429035 GTPBP10A4D1E9 387 aaKnown RBP14.89□□□□□ -0.03
SDC1-204ENST00000429035 LATO43561 262 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 ATP9BO43861 1147 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 CNTN5O94779 1100 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 TFE3P19532 575 aaPredicted RBP14.89□□□□□ -0.03
SDC1-204ENST00000429035 ACADVLP49748 655 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 CDH4P55283 916 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 KRT83P78385 493 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 DEUP1Q05D60 604 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 MTA1Q13330 715 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 STAT4Q14765 748 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 MAN2A1Q16706 1144 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 SETMARQ53H47 684 aaPredicted RBP14.89□□□□□ -0.03
SDC1-204ENST00000429035 ALFQ53S48 1182 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 C6orf118Q5T5N4 469 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 HES3Q5TGS1 186 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 OTUD1Q5VV17 481 aaPredicted RBP14.89□□□□□ -0.03
SDC1-204ENST00000429035 TAF3Q5VWG9 929 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 SLC26A9Q7LBE3 791 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 GRIN3AQ8TCU5 1115 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 NXPE2Q96DL1 559 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 ALG14Q96F25 216 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 WDCPQ9H6R7 721 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 SIX2Q9NPC8 291 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 FZD3Q9NPG1 666 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 PIGVQ9NUD9 493 aa14.89□□□□□ -0.03
SDC1-204ENST00000429035 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.89□□□□□ -0.03
SDC1-204ENST00000429035 ARID1BQ8NFD5 2236 aaPredicted RBP14.89□□□□□ -0.03
SDC1-204ENST00000429035 TRPM6Q9BX84 2022 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 DSPP15924 2871 aaKnown RBP14.88□□□□□ -0.03
SDC1-204ENST00000429035 CELSR3Q9NYQ7 3312 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 GOLGA8SH3BPF8 625 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 FOXN3O00409 490 aaPredicted RBP14.88□□□□□ -0.03
SDC1-204ENST00000429035 ALOX15BO15296 676 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 SLC31A1O15431 190 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 MAGEC1O60732 1142 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 RNGTTO60942 597 aaKnown RBP14.88□□□□□ -0.03
SDC1-204ENST00000429035 SRCP12931 536 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 PRLRP16471 622 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 RRM1P23921 792 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 UBE2HP62256 183 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 BRMS1LQ5PSV4 323 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 LINGO4Q6UY18 593 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 TMPRSS12Q86WS5 348 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 TRIM69Q86WT6 500 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 SPATS2Q86XZ4 545 aaKnown RBP14.88□□□□□ -0.03
SDC1-204ENST00000429035 FAM114A1Q8IWE2 563 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 MFSD2AQ8NA29 543 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 TMEM35BQ8NCS4 154 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 TBCBQ99426 244 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 PSMB7Q99436 277 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 C2orf49Q9BVC5 232 aaPredicted RBP14.88□□□□□ -0.03
SDC1-204ENST00000429035 KDM4CQ9H3R0 1056 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 VPS51Q9UID3 782 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 DMTF1Q9Y222 760 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 PCDHGA1Q9Y5H4 931 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 BAHCC1Q9P281 2608 aa14.88□□□□□ -0.03
SDC1-204ENST00000429035 A0A1W2PQU0 124 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 K7ERQ8 282 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 MCF2LO15068 1137 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 ENDOD1O94919 500 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 MT-CO1P00395 513 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 CTSLP07711 333 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 CLCN1P35523 988 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 RECQLP46063 649 aaPredicted RBP14.87□□□□□ -0.03
SDC1-204ENST00000429035 DAB2P98082 770 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 CAMK2BQ13554 666 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 ACAP1Q15027 740 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 HS1BP3Q53T59 392 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 C2CD6Q53TS8 623 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 C22orf39Q6P5X5 142 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 LRRC31Q6UY01 552 aa14.87□□□□□ -0.03
SDC1-204ENST00000429035 IRF2BP1Q8IU81 584 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms