RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 UGT1A3P35503 534 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 UGT1A5P35504 534 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 GARSP41250 739 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 CDH8P55286 799 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 SESN2P58004 480 aaPredicted RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 SP4Q02446 784 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 ITGA7Q13683 1181 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 BCL2A1Q16548 175 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 CCDC14Q49A88 953 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 XKR3Q5GH77 459 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 FGD3Q5JSP0 725 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 GRTP1Q5TC63 336 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 ARHGEF16Q5VV41 709 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 PPP4R4Q6NUP7 873 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 NIPAL1Q6NVV3 410 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 GPRASP2Q96D09 838 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 QKIQ96PU8 341 aaKnown RBP eCLIP10.9□□□□□ -0.66
USP54-204ENST00000422491 RBBP8Q99708 897 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 TMEM134Q9H6X4 195 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 NOL11Q9H8H0 719 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 ACSS2Q9NR19 701 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 UTP6Q9NYH9 597 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 ADA2Q9NZK5 511 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 TXNDC16Q9P2K2 825 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 ADAM28Q9UKQ2 775 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 FAM32AQ9Y421 112 aaKnown RBP10.9□□□□□ -0.66
USP54-204ENST00000422491 ANKRD31Q8N7Z5 1873 aa10.9□□□□□ -0.66
USP54-204ENST00000422491 KIAA1217Q5T5P2 1943 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 F5H423 210 aaPredicted RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 M0QYV0 167 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 DLGAP1O14490 977 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 SOCS2O14508 198 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 TRIM24O15164 1050 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 CLASP2O75122 1294 aaKnown RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 SULT1C4O75897 302 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 GNAO1P09471 354 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 HOXC6P09630 235 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 CKMT2P17540 419 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 CYP2F1P24903 491 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 GJA8P48165 433 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 PSME3P61289 254 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 TFAMQ00059 246 aaKnown RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 PTPN11Q06124 597 aaPredicted RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 GALNT2Q10471 571 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 AARS2Q5JTZ9 985 aaKnown RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 TREML2Q5T2D2 321 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 SCYL2Q6P3W7 929 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 KCNT2Q6UVM3 1135 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 ABHD15Q6UXT9 468 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 CHSY3Q70JA7 882 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 ZBTB33Q86T24 672 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 ANKFN1Q8N957 763 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 CERS2Q96G23 380 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 BCO2Q9BYV7 579 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 PALMDQ9NP74 551 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 SYBUQ9NX95 663 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 ZDHHC2Q9UIJ5 367 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 CNOT6Q9ULM6 557 aaKnown RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 CDYLQ9Y232 598 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 HES2Q9Y543 173 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 A0A096LPK6 155 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 E7ENX8 843 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 GRAP2O75791 330 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 PIGNO95427 931 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 LIMK2P53671 638 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 ACTR2P61160 394 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 PRAMEP78395 509 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 DLG2Q15700 870 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 ARL13AQ5H913 290 aaPredicted RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 ZNF362Q5T0B9 420 aaPredicted RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 FSTL4Q6MZW2 842 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 ZBTB49Q6ZSB9 765 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 FAM183BPQ6ZVS7 135 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 VSIG10LQ86VR7 867 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 TTC30AQ86WT1 665 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 SREK1Q8WXA9 508 aaKnown RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 LPGAT1Q92604 370 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 MPHOSPH6Q99547 160 aaKnown RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 MAF1Q9H063 256 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 NMRAL1Q9HBL8 299 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 JPH1Q9HDC5 661 aaPredicted RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 TRNAU1APQ9NX07 287 aaKnown RBP10.89□□□□□ -0.67
USP54-204ENST00000422491 TRIM17Q9Y577 477 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 UBR3Q6ZT12 1888 aa10.89□□□□□ -0.67
USP54-204ENST00000422491 ZNF487B1APH4 448 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 TCP10L2B9ZVM9 353 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 PIK3R2O00459 728 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 GIPC1O14908 333 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 MDM4O15151 490 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 RGS20O76081 388 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 CDH3P22223 829 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 MYF6P23409 242 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 BMXP51813 675 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 TRAP1Q12931 704 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 PMS2P3Q13401 168 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 MOGQ16653 247 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 KIZQ2M2Z5 673 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 MEX3CQ5U5Q3 659 aaKnown RBP10.88□□□□□ -0.67
USP54-204ENST00000422491 ANKRD26P1Q6NSI1 321 aa10.88□□□□□ -0.67
USP54-204ENST00000422491 CES3Q6UWW8 571 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 154.6 ms