RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 HTATIP2Q9BUP3 242 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 MS4A7Q9GZW8 240 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 DNAJC18Q9H819 358 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 UNKLQ9H9P5 680 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PLEKHA2Q9HB19 425 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 GIMAP4Q9NUV9 329 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 BEX4Q9NWD9 120 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PPP1R14DQ9NXH3 145 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ACTR3BQ9P1U1 418 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 DKK4Q9UBT3 224 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ANGPTL3Q9Y5C1 460 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 KIF28PB7ZC32 967 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 BOLA2-SMG1P6H3BVE0 249 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 MYO1CO00159 1063 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PSMD14O00487 310 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 WDR46O15213 610 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ZBTB43O43298 467 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 CCP110O43303 1012 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ADCY6O43306 1168 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 STX6O43752 255 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 TULP3O75386 442 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PSMD10O75832 226 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PNPP00491 289 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 HEXBP07686 556 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 GNAI3P08754 354 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 LTA4HP09960 611 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 TPH1P17752 444 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 NR4A1P22736 598 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PROZP22891 400 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 IL4RP24394 825 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PTAFRP25105 342 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 APOBEC3AP31941 199 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PBX3P40426 434 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 AMPHP49418 695 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ARFIP1P53367 373 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 WNT3P56703 355 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 KRTAP10-6P60371 365 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 RPL7AP62424 266 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 GNAI1P63096 354 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 BLOC1S1P78537 153 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 MRPS21P82921 87 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 COL10A1Q03692 680 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 EIF2B5Q13144 721 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 RPA4Q13156 261 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 CBX3Q13185 183 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ATP1A4Q13733 1029 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ARHGEF7Q14155 803 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 HSP90B2PQ58FF3 399 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ZRANB3Q5FWF4 1079 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ATXN7L2Q5T6C5 722 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 TMEM154Q6P9G4 183 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 CRELD2Q6UXH1 353 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 TUSC5Q8IXB3 177 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 FAM217AQ8IXS0 508 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 FAM71DQ8N9W8 422 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 POC5Q8NA72 575 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 KIF18AQ8NI77 898 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 DUSP19Q8WTR2 217 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 WDR60Q8WVS4 1066 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 MR1Q95460 341 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 CAVIN3Q969G5 261 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PDLIM5Q96HC4 596 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 VPS39Q96JC1 886 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 CNDP1Q96KN2 507 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 CCDC114Q96M63 670 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 UHRF1Q96T88 793 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ARHGEF3Q9NR81 526 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 DDX43Q9NXZ2 648 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 TAS2R3Q9NYW6 316 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 ZNF70Q9UC06 446 aaPredicted RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 HOOK1Q9UJC3 728 aaKnown RBP4.32□□□□□ -1.72
HMGB1-204ENST00000399489 LIPT1Q9Y234 373 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 PLEKHM1Q9Y4G2 1056 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 TRIM17Q9Y577 477 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 FPGT-TNNI3KV9GXZ4 949 aa4.32□□□□□ -1.72
HMGB1-204ENST00000399489 IGSF1Q8N6C5 1336 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 hCG_1809904A0A1W2PP81 198 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 A0A1W2PPE2 198 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 A0A1W2PR64 198 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 GRID2IPA4D2P6 1211 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 ERICH4A6NGS2 130 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 FAM25EA8MYX2 175 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 BCAT2O15382 392 aaPredicted RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 KLHL41O60662 606 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 TAF5LO75529 589 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 PALMO75781 387 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 BCAS2O75934 225 aaPredicted RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 GCNT3O95395 438 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 GNAI2P04899 355 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 SBK3P0C264 359 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 SAT1P21673 171 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 FBLP22087 321 aaKnown RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 IL10P22301 178 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 CD38P28907 300 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 PBLDP30039 288 aaPredicted RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 HOXC8P31273 242 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 PTDSS1P48651 473 aaKnown RBP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 CDH8P55286 799 aa4.31□□□□□ -1.72
HMGB1-204ENST00000399489 SF3A3Q12874 501 aaKnown RBP eCLIP4.31□□□□□ -1.72
HMGB1-204ENST00000399489 GPS1Q13098 491 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms