RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 OR12D3Q9UGF7 316 aa14.95□□□□□ -0.02
SEC13-208ENST00000397109 NCKAP1Q9Y2A7 1128 aa14.95□□□□□ -0.02
SEC13-208ENST00000397109 PPP2R2CQ9Y2T4 447 aa14.95□□□□□ -0.02
SEC13-208ENST00000397109 TNRC6BQ9UPQ9 1833 aaKnown RBP14.94□□□□□ -0.02
SEC13-208ENST00000397109 SSU72P8A0A1W2PR75 194 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 ILVBLA1L0T0 632 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 RRM1P23921 792 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 OR1E1P30953 314 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 STK19P49842 368 aaPredicted RBP14.94□□□□□ -0.02
SEC13-208ENST00000397109 MAPK8IP2Q13387 824 aaPredicted RBP14.94□□□□□ -0.02
SEC13-208ENST00000397109 TRIM61Q5EBN2 209 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 PPP1R15BQ5SWA1 713 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 SH3PXD2AQ5TCZ1 1133 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 STPG1Q5TH74 334 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 IL31Q6EBC2 164 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 TCEAL6Q6IPX3 200 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 SLC23A3Q6PIS1 610 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 USP30Q70CQ3 517 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 CACUL1Q86Y37 369 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 CCDC170Q8IYT3 715 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 RGL4Q8IZJ4 473 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 OR52K2Q8NGK3 314 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 TCEAL3Q969E4 200 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 C16orf45Q96MC5 204 aaPredicted RBP14.94□□□□□ -0.02
SEC13-208ENST00000397109 MCEEQ96PE7 176 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 EDEM2Q9BV94 578 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 MTG2Q9H4K7 406 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 SGK2Q9HBY8 427 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 TMEM74BQ9NUR3 256 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 TAS2R14Q9NYV8 317 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 MPP6Q9NZW5 540 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 SUSD2Q9UGT4 822 aa14.94□□□□□ -0.02
SEC13-208ENST00000397109 CNOT1A5YKK6 2376 aaKnown RBP14.93□□□□□ -0.02
SEC13-208ENST00000397109 NUMA1Q14980 2115 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 METTL12A8MUP2 240 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 MEI4A8MW99 385 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 TMCO5BA8MYB1 307 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 ATP9BO43861 1147 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 RTN2O75298 545 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 FTLP02792 175 aaPredicted RBP14.93□□□□□ -0.02
SEC13-208ENST00000397109 GNSP15586 552 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 RPL7AP62424 266 aaKnown RBP14.93□□□□□ -0.02
SEC13-208ENST00000397109 IRX4P78413 519 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 ELAVL3Q14576 367 aaKnown RBP14.93□□□□□ -0.02
SEC13-208ENST00000397109 CST6Q15828 149 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 ACCSLQ4AC99 568 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 PLEKHA7Q6IQ23 1121 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 ZNF662Q6ZS27 426 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 TFAP2DQ7Z6R9 452 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 SLFN11Q7Z7L1 901 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 VPS36Q86VN1 386 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 REXO1L1PQ8IX06 675 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 DCAF4L2Q8NA75 395 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 FRS2Q8WU20 508 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 DNASE2BQ8WZ79 361 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 PTPRN2Q92932 1015 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 TRIM11Q96F44 468 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 BTBD1Q9H0C5 482 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 PABPC3Q9H361 631 aaKnown RBP14.93□□□□□ -0.02
SEC13-208ENST00000397109 RXFP3Q9NSD7 469 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 SLC6A14Q9UN76 642 aa14.93□□□□□ -0.02
SEC13-208ENST00000397109 LNP1A1A4G5 178 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 PATE3B3GLJ2 98 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 DDX3XO00571 662 aaKnown RBP eCLIP14.92□□□□□ -0.027e-9■■□□□ 13.3
SEC13-208ENST00000397109 ADH1BP00325 375 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 PLEKP08567 350 aaPredicted RBP14.92□□□□□ -0.02
SEC13-208ENST00000397109 SERPINF2P08697 491 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 RHOQP17081 205 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 ETFBP38117 255 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 AIF1P55008 147 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 ETF1P62495 437 aaKnown RBP14.92□□□□□ -0.02
SEC13-208ENST00000397109 SCAPQ12770 1279 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 MAMLD1Q13495 774 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 ASTE1Q2TB18 679 aaPredicted RBP14.92□□□□□ -0.02
SEC13-208ENST00000397109 RAB6CQ53S08 254 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 TDRD12Q587J7 1177 aaKnown RBP14.92□□□□□ -0.02
SEC13-208ENST00000397109 ARTNQ5T4W7 220 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 MANEALQ5VSG8 457 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 SCYL2Q6P3W7 929 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 DSG4Q86SJ6 1040 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 FAM124AQ86V42 546 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 MMAAQ8IVH4 418 aaKnown RBP14.92□□□□□ -0.02
SEC13-208ENST00000397109 SH2D3CQ8N5H7 860 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 GANCQ8TET4 914 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 FAM129BQ96TA1 746 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 RAB6CQ9H0N0 254 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 TRMT1Q9NXH9 659 aaKnown RBP14.92□□□□□ -0.02
SEC13-208ENST00000397109 FBXL12Q9NXK8 326 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 HS3ST2Q9Y278 367 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 FARP1Q9Y4F1 1045 aaPredicted RBP14.92□□□□□ -0.02
SEC13-208ENST00000397109 CACNA1EQ15878 2313 aa14.92□□□□□ -0.02
SEC13-208ENST00000397109 CACNA1AO00555 2505 aa14.91□□□□□ -0.02
SEC13-208ENST00000397109 ATXN2Q99700 1313 aaKnown RBP14.91□□□□□ -0.02
SEC13-208ENST00000397109 USP27XA6NNY8 438 aa14.91□□□□□ -0.02
SEC13-208ENST00000397109 SEMA4FO95754 770 aa14.91□□□□□ -0.02
SEC13-208ENST00000397109 CFIP05156 583 aa14.91□□□□□ -0.02
SEC13-208ENST00000397109 MYBL1P10243 752 aa14.91□□□□□ -0.02
SEC13-208ENST00000397109 C5AR1P21730 350 aa14.91□□□□□ -0.02
SEC13-208ENST00000397109 SLC8A1P32418 973 aa14.91□□□□□ -0.02
SEC13-208ENST00000397109 CYLC1P35663 651 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms