RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ALKAL1Q6UXT8 129 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 ARMCX2Q7L311 632 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 MARVELD2Q8N4S9 558 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 UPF1Q92900 1129 aaKnown RBP eCLIP12.95□□□□□ -0.342e-6■■■■□ 24.1
SHMT1-205ENST00000395684 ACE2Q9BYF1 805 aaPredicted RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 PRDM16Q9HAZ2 1276 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 CLIC5Q9NZA1 410 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 ZSWIM8A7E2V4 1837 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 HDAC3O15379 428 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 GRID2O43424 1007 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 JUNP05412 331 aaKnown RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 TPH1P17752 444 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 ERCC2P18074 760 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 TFEBP19484 476 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 GRIA4P48058 902 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 RPL14P50914 215 aaKnown RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 MRPS22P82650 360 aaKnown RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 MPP3Q13368 585 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 PIGGQ5H8A4 983 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 ARL13AQ5H913 290 aaPredicted RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 HFE2Q6ZVN8 426 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 KCNMB4Q86W47 210 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 RNF148Q8N7C7 305 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 VPS39Q96JC1 886 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 EPAS1Q99814 870 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 MLPHQ9BV36 600 aaPredicted RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 NUF2Q9BZD4 464 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 DRC3Q9H069 523 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 NXF3Q9H4D5 531 aaKnown RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 CDHR5Q9HBB8 845 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 IARS2Q9NSE4 1012 aaKnown RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 C20orf96Q9NUD7 363 aaPredicted RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 SETD4Q9NVD3 440 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 ZDHHC2Q9UIJ5 367 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 SLC39A10Q9ULF5 831 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 PRPF19Q9UMS4 504 aaKnown RBP12.95□□□□□ -0.34
SHMT1-205ENST00000395684 RAP2CQ9Y3L5 183 aa12.95□□□□□ -0.34
SHMT1-205ENST00000395684 H3BRB1 525 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 CLDN5O00501 218 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 PIRO00625 290 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 XPO1O14980 1071 aaKnown RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 DAB1O75553 588 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 PMLP29590 882 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 NOS2P35228 1153 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 DPP6P42658 865 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 PKNOX1P55347 436 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 CEACAM7Q14002 265 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 GRM3Q14832 879 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 SEL1L3Q68CR1 1132 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 LILRA2Q8N149 483 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 RP9Q8TA86 221 aaKnown RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 RCN3Q96D15 328 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 C1QTNF1Q9BXJ1 281 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 SNX25Q9H3E2 840 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 OCEL1Q9H607 264 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 TUT1Q9H6E5 874 aaKnown RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 TASP1Q9H6P5 420 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 POLR2AP24928 1970 aaKnown RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 SMIM31A0A1B0GVY4 71 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 CFLARO15519 480 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 TIMM44O43615 452 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 RECQL4O94761 1208 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 PIGNO95427 931 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 TFAP2AP05549 437 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 CYP2B6P20813 491 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 SAT1P21673 171 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 GLRBP48167 497 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 CSRP3P50461 194 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 NAGLUP54802 743 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 CYLC2Q14093 348 aaPredicted RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 FLOT2Q14254 428 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 FRG1Q14331 258 aaKnown RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 GK3PQ14409 553 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 SLC27A1Q6PCB7 646 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 C16orf89Q6UX73 402 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 SPATA24Q86W54 205 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 NPWQ8N729 165 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 PPTC7Q8NI37 304 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 PIP4K2CQ8TBX8 421 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 SLC16A10Q8TF71 515 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 SREK1Q8WXA9 508 aaKnown RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 USP13Q92995 863 aaPredicted RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 NMD3Q96D46 503 aaKnown RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 SERPINI1Q99574 410 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 UBE2OQ9C0C9 1292 aaKnown RBP12.94□□□□□ -0.34
SHMT1-205ENST00000395684 ZNF385DQ9H6B1 395 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 GOLGA2P5Q9HBQ8 144 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 KLK14Q9P0G3 267 aa12.94□□□□□ -0.34
SHMT1-205ENST00000395684 CCDC78A2IDD5 438 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 STX16-NPEPL1H3BU86 382 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 NMBRP28336 390 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 ATXN3P54252 364 aaPredicted RBP12.93□□□□□ -0.34
SHMT1-205ENST00000395684 ZBTB17Q13105 803 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 LAMB3Q13751 1172 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 GRIK4Q16099 956 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 CNGA3Q16281 694 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 LIPMQ5VYY2 423 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 ZYG11AQ6WRX3 759 aa12.93□□□□□ -0.34
SHMT1-205ENST00000395684 BNC2Q6ZN30 1099 aaPredicted RBP12.93□□□□□ -0.34
SHMT1-205ENST00000395684 CPSF7Q8N684 471 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms