RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CD163L1Q9NR16 1453 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 CREMQ03060 361 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 BHLHB9Q6PI77 547 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 IFNLR1Q8IU57 520 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 BSNDQ8WZ55 320 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 SEMA4DQ92854 862 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC25A12O75746 678 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 CDC42P60953 191 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 PROSER1Q86XN7 944 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC38A2Q96QD8 506 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 CRNNQ9UBG3 495 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 H3BRB1 525 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 FGF10O15520 208 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 ATN1P54259 1190 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 CROCCP3Q8IVE0 287 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 C8orf59Q8N0T1 100 aaPredicted RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 TCP10LQ8TDR4 215 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 TBCDQ9BTW9 1192 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 PAIP1Q9H074 479 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 TUT1Q9H6E5 874 aaKnown RBP12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 FBXO28Q9NVF7 368 aa12.99□□□□□ -0.33
CCDC88C-204ENST00000389857 PRG2P13727 222 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 CRATP43155 626 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 EHD4Q9H223 541 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SOHLH2Q9NX45 425 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC9A8Q9Y2E8 581 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 LYVE1Q9Y5Y7 322 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 UMODL1Q5DID0 1318 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 A0A087WXM4 84 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 PRMT3O60678 531 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 THOP1P52888 689 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 BTG3Q14201 252 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 MFSD10Q14728 455 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 MAPK11Q15759 364 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 CCDC185Q8N715 623 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 NKX2-3Q8TAU0 364 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ABCC13Q9NSE7 274 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 TMEM39AQ9NV64 488 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 CCDC167Q9P0B6 97 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SCAF8Q9UPN6 1271 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 CAPN6Q9Y6Q1 641 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 MYO3AQ8NEV4 1616 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SPATA31A1Q5TZJ5 1347 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 PTGES3LE9PB15 166 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 FDPSP14324 419 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 EPHX2P34913 555 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 TRAPPC5Q8IUR0 188 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 TMEM86AQ8N2M4 240 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ATL1Q8WXF7 558 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ZDHHC6Q9H6R6 413 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 CDHR5Q9HBB8 845 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 URADA6NGE7 173 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 MT-CO1P00395 513 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ALADP13716 330 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 YBX3P16989 372 aaKnown RBP eCLIP12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 LRPAP1P30533 357 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 LIN54Q6MZP7 749 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 FBXO25Q8TCJ0 367 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 DNAJB3Q8WWF6 145 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SUSD6Q92537 303 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ZBTB10Q96DT7 871 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SETD4Q9NVD3 440 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ING3Q9NXR8 418 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ABCA6Q8N139 1617 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 CLTCQ00610 1675 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SMIM11AP58511 58 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ACSM2AQ08AH3 577 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 MTAPQ13126 283 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 PGM5Q15124 567 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 INSCQ1MX18 579 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 DDI2Q5TDH0 399 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ACSM2BQ68CK6 577 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 TTI2Q6NXR4 508 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 CLVS1Q8IUQ0 354 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 NUAK2Q9H093 628 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 KBTBD4Q9NVX7 518 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 UBE2QL1A1L167 161 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 AP3D1O14617 1153 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC9A3R1O14745 358 aaPredicted RBP12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 KHDRBS3O75525 346 aaKnown RBP12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ITGA2P17301 1181 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SLC6A3Q01959 620 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 PAGE2Q7Z2X7 111 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 SMYD1Q8NB12 490 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 MFSD1Q9H3U5 465 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 ANGPT4Q9Y264 503 aa12.98□□□□□ -0.33
CCDC88C-204ENST00000389857 VAPBO95292 243 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 R3HCC1LQ7Z5L2 792 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 SOCS4Q8WXH5 440 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 ASB7Q9H672 318 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 NOL6Q9H6R4 1146 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 GBA2Q9HCG7 927 aaPredicted RBP12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 SAR1AQ9NR31 198 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 DNPEPQ9ULA0 475 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 TMX2Q9Y320 296 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 CD44P16070 742 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 CCNIQ14094 377 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 PABPC1LQ4VXU2 614 aaKnown RBP12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 IL22Q9GZX6 179 aa12.97□□□□□ -0.33
CCDC88C-204ENST00000389857 POPDC2Q9HBU9 364 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms