RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 ZNF276Q8N554 614 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 FNDC5Q8NAU1 212 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ASB7Q9H672 318 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 POLR1BQ9H9Y6 1135 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 USE1Q9NZ43 259 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 SNTNA6NMZ2 147 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 CABYRO75952 493 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 FBXO21O94952 628 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ANXA6P08133 673 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 DLDP09622 509 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 MAGEA8P43361 318 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 RAP1GAPP47736 663 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 IREB2P48200 963 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 IDH3AP50213 366 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 LAMTOR4Q0VGL1 99 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 CSHL1Q14406 222 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 GLRA4Q5JXX5 417 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ASRGL1Q7L266 308 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 FAM126BQ8IXS8 530 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 TMEM161BQ8NDZ6 487 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 C7orf43Q8WVR3 580 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 KREMEN1Q96MU8 473 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 WDR18Q9BV38 432 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 INVSQ9Y283 1065 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 USP54Q70EL1 1684 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 KRT6AP02538 564 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 KRT6BP04259 564 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 UMPSP11172 480 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 IL12AP29459 219 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 NME5P56597 212 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ZC3H12BQ5HYM0 836 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 SPOCK2Q92563 424 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PABPC5Q96DU9 382 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 MTERF3Q96E29 417 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PANX3Q96QZ0 392 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 NOL6Q9H6R4 1146 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ADAM30Q9UKF2 790 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ASB14A6NK59 587 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 E5RJQ4 531 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ZMPSTE24O75844 475 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 VAPBO95292 243 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 CRTAMO95727 393 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 MLYCDO95822 493 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PABPC4LP0CB38 370 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 COL6A2P12110 1019 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 AKT1P31749 480 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 TRAP1Q12931 704 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 POU6F1Q14863 301 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 TMEM26Q6ZUK4 368 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 AFG1LQ8WV93 481 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 DEPDC7Q96QD5 511 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PCDHB18PQ96TA0 734 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 MRIQ9BWK5 157 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 CASS4Q9NQ75 786 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ROBO1Q9Y6N7 1651 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 LRCH4O75427 683 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 HIST1H2AGP0C0S8 130 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 STAG3L1P0CL83 205 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 CREB1P16220 341 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 HIST1H2ADP20671 130 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 NDST1P52848 882 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 KLHL12Q53G59 568 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PCID2Q5JVF3 399 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 HELQQ8TDG4 1101 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 SGF29Q96ES7 293 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 HIST1H2AHQ96KK5 128 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 HIST1H2AJQ99878 128 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 H2AFJQ9BTM1 129 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 C6orf62Q9GZU0 229 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 CACNA2D2Q9NY47 1150 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 KLHL3Q9UH77 587 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PCDHB8Q9UN66 801 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PIN4Q9Y237 131 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PKP3Q9Y446 797 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PLIN4Q96Q06 1357 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 RHOBTB1O94844 696 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 CHRM3P20309 590 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 HIRAP54198 1017 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 OLR1P78380 273 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 INO80DQ53TQ3 878 aaPredicted RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 SFRP1Q8N474 314 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 LZTR1Q8N653 840 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ATG16L2Q8NAA4 619 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 ASB9Q96DX5 294 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 TCF12Q99081 682 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 MMP19Q99542 508 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PORCNQ9H237 461 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 TRNAU1APQ9NX07 287 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 DDIT4Q9NX09 232 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 TMEM161AQ9NX61 479 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 TAS2R13Q9NYV9 303 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 SNCAIPQ9Y6H5 919 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 HLA-DPA1P20036 260 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 NEK3P51956 506 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 PSME3P61289 254 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 USP4Q13107 963 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 TRIM25Q14258 630 aaKnown RBP4.86□□□□□ -1.63
CSMD3-203ENST00000343508 NCF4Q15080 339 aa4.86□□□□□ -1.63
CSMD3-203ENST00000343508 NADK2Q4G0N4 442 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms