RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 JUNP05412 331 aaKnown RBP10.26□□□□□ -0.77
LIG3-201ENST00000262327 APLP1P51693 650 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 INHBCP55103 352 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 KLF10Q13118 480 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 TBCCQ15814 346 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 GSTA3Q16772 222 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 DUSP28Q4G0W2 176 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 LIN52Q52LA3 116 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 PTAR1Q7Z6K3 402 aaPredicted RBP10.26□□□□□ -0.77
LIG3-201ENST00000262327 SNX32Q86XE0 403 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 TDRD5Q8NAT2 981 aaKnown RBP10.26□□□□□ -0.77
LIG3-201ENST00000262327 PPTC7Q8NI37 304 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 RNF139Q8WU17 664 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 ZIC5Q96T25 663 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 APBA2Q99767 749 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 CHRAC1Q9NRG0 131 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 SLC39A10Q9ULF5 831 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 SSX2IPQ9Y2D8 614 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 ZNF510Q9Y2H8 683 aa10.26□□□□□ -0.77
LIG3-201ENST00000262327 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 PDLIM1O00151 329 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 TNPO2O14787 897 aaKnown RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 CCNT2O60583 730 aaKnown RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 IGHA2P01877 340 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 POLBP06746 335 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 GNL1P36915 607 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 GP5P40197 560 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 ADCYAP1R1P41586 468 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 FCGRTP55899 365 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 DYNC1I2Q13409 638 aaKnown RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 STEAP4Q687X5 459 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 PGM2L1Q6PCE3 622 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 PIGZQ86VD9 579 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 SNX31Q8N9S9 440 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 RNF169Q8NCN4 708 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 RAB3IL1Q8TBN0 382 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 USP33Q8TEY7 942 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 CMTM5Q96DZ9 223 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 CAPNS2Q96L46 248 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 CATSPER2Q96P56 530 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 OLFM3Q96PB7 478 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 TRAPPC9Q96Q05 1148 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 SPATA16Q9BXB7 569 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 GCOM2Q9BZD3 368 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 ANLNQ9NQW6 1124 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 IARS2Q9NSE4 1012 aaKnown RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 USP3Q9Y6I4 520 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 ZNF638Q14966 1978 aaKnown RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 SF3B1O75533 1304 aaKnown RBP eCLIP10.25□□□□□ -0.773e-6■■■■■ 140.2
LIG3-201ENST00000262327 C2P06681 752 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 ENO3P13929 434 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 UQCRBP14927 111 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 ZFXP17010 805 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 MX2P20592 715 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 NR2C2P49116 596 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 CDK7P50613 346 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 KDELC2Q7Z4H8 507 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 FBXW8Q8N3Y1 598 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 GALNT4Q8N4A0 578 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 ACTRT2Q8TDY3 377 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 SGF29Q96ES7 293 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 CDRT15Q96T59 188 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 GATA5Q9BWX5 397 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 CFHR5Q9BXR6 569 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 SETD4Q9NVD3 440 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 KIAA1257Q9ULG3 409 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 CCDC160A6NGH7 325 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 TMEM233B4DJY2 109 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 H3BNX3 289 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 HOXD8P13378 290 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 ATP6V1B1P15313 513 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 ZNF24P17028 368 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 FDFT1P37268 417 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 PTPN9P43378 593 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 FOLH1Q04609 750 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 BST2Q10589 180 aaKnown RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 PDK3Q15120 406 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 PABPC1LQ4VXU2 614 aaKnown RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 IL31Q6EBC2 164 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 SLC26A9Q7LBE3 791 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 ST13P4Q8IZP2 240 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 SCYL1Q96KG9 808 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 OSMRQ99650 979 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 OMDQ99983 421 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 C11orf84Q9BUA3 381 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 CDH19Q9H159 772 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 RNF39Q9H2S5 420 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 C20orf96Q9NUD7 363 aaPredicted RBP10.25□□□□□ -0.77
LIG3-201ENST00000262327 APPL1Q9UKG1 709 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 FZD10Q9ULW2 581 aa10.25□□□□□ -0.77
LIG3-201ENST00000262327 G3V2L1 256 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 ZBTB24O43167 697 aaPredicted RBP10.24□□□□□ -0.77
LIG3-201ENST00000262327 XRCC1P18887 633 aaPredicted RBP10.24□□□□□ -0.77
LIG3-201ENST00000262327 CNTFP26441 200 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 ACAD11Q709F0 780 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 CATSPER4Q7RTX7 472 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 KBTBD7Q8WVZ9 684 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 APBB2Q92870 758 aa10.24□□□□□ -0.77
LIG3-201ENST00000262327 CELF6Q96J87 481 aaKnown RBP10.24□□□□□ -0.77
LIG3-201ENST00000262327 DNAJC1Q96KC8 554 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms