RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PRKAG3Q9UGI9 489 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 PIN4Q9Y237 131 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 TRIM17Q9Y577 477 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 PCDHGB7Q9Y5F8 929 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ARHGEF33A8MVX0 844 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 MSCO60682 206 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 H2AFXP16104 143 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 CDH3P22223 829 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 CD151P48509 253 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 SCN1BQ07699 218 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 BST2Q10589 180 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 RIPK1Q13546 671 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 TOB2Q14106 344 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 LRRC41Q15345 812 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ZPBP2Q6X784 338 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 DDX53Q86TM3 631 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ZCCHC9Q8N567 271 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 RNF149Q8NC42 400 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ARRDC4Q8NCT1 418 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 DHX33Q9H6R0 707 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 INTS1Q8N201 2190 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 EIF4E1BA6NMX2 242 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 SSNA1O43805 119 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 CST8O60676 142 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 SRGAP2O75044 1071 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 AVILO75366 819 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 SUPT7LO94864 414 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 SOX30O94993 753 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 CETPP11597 493 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 SLC26A3P40879 764 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 HALP42357 657 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ADARP55265 1226 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ATP6V0D1P61421 351 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 NFYCQ13952 458 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ATXN7L2Q5T6C5 722 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 QSOX2Q6ZRP7 698 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 PUS7LQ9H0K6 701 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 DCCP43146 1447 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 RGPD1P0DJD0 1748 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ERCC6L2Q5T890 1561 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ADAMDEC1O15204 470 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ZBTB14O43829 449 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ITGA4P13612 1032 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 EMC2Q15006 297 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ZRANB3Q5FWF4 1079 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 CPNE9Q8IYJ1 553 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 MREGQ8N565 214 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 BHLHE22Q8NFJ8 381 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 MRPS31Q92665 395 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 PTPN7P35236 360 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 VAC14Q08AM6 782 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 CYP2A13Q16696 494 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 METTL21CQ5VZV1 264 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 HLA-DQA1Q5Y7H0 255 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 TYW3Q6IPR3 259 aaKnown RBP6.17□□□□□ -1.42
VPS13D-201ENST00000011700 ADCK2Q7Z695 626 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 GALNT4Q8N4A0 578 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 C9orf72Q96LT7 481 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 GULP1Q9UBP9 304 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 MAGEL2Q9UJ55 1249 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 PCDHGB6Q9Y5F9 930 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 SCN11AQ9UI33 1791 aa6.17□□□□□ -1.42
VPS13D-201ENST00000011700 OGTO15294 1046 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 DNAJB5O75953 348 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 NFICP08651 508 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 CHRNA5P30532 468 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 NR1D2Q14995 579 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 AKAP14Q86UN6 197 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 IFNL1Q8IU54 200 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 CHCHD4Q8N4Q1 142 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 FAM13CQ8NE31 585 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 DENND1AQ8TEH3 1009 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 EURLQ9NYK6 297 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 MAN2B2Q9Y2E5 1009 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 UMODL1Q5DID0 1318 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 MROH1Q8NDA8 1641 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 FAM86C2PA6NEL3 165 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 H3BN98 237 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 MATN2O00339 956 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SORBS3O60504 671 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ARFIP1P53367 373 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PUDPQ08623 228 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF268Q14587 947 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PKN1Q16512 942 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PARP6Q2NL67 630 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ATP13A5Q4VNC0 1218 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 CCDC81Q6ZN84 652 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 FBXO39Q8N4B4 442 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 ZNF671Q8TAW3 534 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 SYTL5Q8TDW5 730 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 EHD4Q9H223 541 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 C3orf14Q9HBI5 128 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 BARX2Q9UMQ3 279 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 FNDC3AQ9Y2H6 1198 aaKnown RBP6.16□□□□□ -1.42
VPS13D-201ENST00000011700 PCDHA3Q9Y5H8 950 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 OR14I1A6ND48 311 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 RBAK-RBAKDNI3L0D1 243 aa6.16□□□□□ -1.42
VPS13D-201ENST00000011700 XYLBO75191 536 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms