RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 CACNA2D2Q9NY47 1150 aa13.54□□□□□ -0.24
GTF3A-209ENST00000640289 DDX56Q9NY93 547 aaKnown RBP13.54□□□□□ -0.24
GTF3A-209ENST00000640289 THAP10Q9P2Z0 257 aaPredicted RBP13.54□□□□□ -0.24
GTF3A-209ENST00000640289 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.54□□□□□ -0.24
GTF3A-209ENST00000640289 MIA3Q5JRA6 1907 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 SGK1O00141 431 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 RAMP2O60895 175 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 DLDP09622 509 aaKnown RBP13.53□□□□□ -0.24
GTF3A-209ENST00000640289 HNRNPLP14866 589 aaKnown RBP eCLIP13.53□□□□□ -0.24
GTF3A-209ENST00000640289 CTNNA1P35221 906 aaKnown RBP13.53□□□□□ -0.24
GTF3A-209ENST00000640289 IL12RB1P42701 662 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 MAGEA9P43362 315 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 STK19P49842 368 aaPredicted RBP13.53□□□□□ -0.24
GTF3A-209ENST00000640289 OXCT1P55809 520 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 ZNF234Q14588 700 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 ANKRD20A8PQ5CZ79 823 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 MFSD7Q6UXD7 560 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 PEX26Q7Z412 305 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 MAP7D3Q8IWC1 876 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 TP53INP2Q8IXH6 220 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 CHPFQ8IZ52 775 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 SYCE1Q8N0S2 351 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 UMODL1-AS1Q8N2C9 162 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 ZNF366Q8N895 744 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 PCDH19Q8TAB3 1148 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 CCDC26Q8TAB7 109 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 UCMAQ8WVF2 138 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 ARHGEF2Q92974 986 aaKnown RBP13.53□□□□□ -0.24
GTF3A-209ENST00000640289 RPL10LQ96L21 214 aaKnown RBP13.53□□□□□ -0.24
GTF3A-209ENST00000640289 MRGPRX3Q96LB0 322 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 ZNF670Q9BS34 389 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 SPON2Q9BUD6 331 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 ATP13A1Q9HD20 1204 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 RCOR3Q9P2K3 495 aaPredicted RBP13.53□□□□□ -0.24
GTF3A-209ENST00000640289 AMFRQ9UKV5 643 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 ERVW-1Q9UQF0 538 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 ACTL7AQ9Y615 435 aa13.53□□□□□ -0.24
GTF3A-209ENST00000640289 F5P12259 2224 aa13.52□□□□□ -0.24
GTF3A-209ENST00000640289 USP27XA6NNY8 438 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 CHURC1-FNTBB4DL54 471 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 RASA4BC9J798 803 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 CBX4O00257 560 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 RASA4O43374 803 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 TIMM44O43615 452 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 ADAM23O75077 832 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 ATP5BP06576 529 aaKnown RBP13.52□□□□□ -0.25
GTF3A-209ENST00000640289 HLA-EP13747 358 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 CTNNA2P26232 953 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 ECT2LQ008S8 904 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 SATB1Q01826 763 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 POLD3Q15054 466 aaPredicted RBP13.52□□□□□ -0.25
GTF3A-209ENST00000640289 LLGL1Q15334 1064 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 FNDC3BQ53EP0 1204 aaKnown RBP13.52□□□□□ -0.25
GTF3A-209ENST00000640289 IL31Q6EBC2 164 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 TMCO3Q6UWJ1 677 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 LINGO4Q6UY18 593 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 ZNF783Q6ZMS7 281 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 ARHGAP12Q8IWW6 846 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 KATNAL2Q8IYT4 538 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 SPEM1Q8N4L4 309 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 PQLC3Q8N755 202 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 DCAF4L2Q8NA75 395 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 DTWD2Q8NBA8 298 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 ALG3Q92685 438 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 FAF2Q96CS3 445 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 HMCESQ96FZ2 354 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 MYO19Q96H55 970 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 SLC39A8Q9C0K1 460 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 MAGEH1Q9H213 219 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 LRRC19Q9H756 370 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 SPATA6Q9NWH7 488 aaPredicted RBP13.52□□□□□ -0.25
GTF3A-209ENST00000640289 VPS51Q9UID3 782 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 SLCO3A1Q9UIG8 710 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 MMP17Q9ULZ9 603 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 PCDHA3Q9Y5H8 950 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 RAD54BQ9Y620 910 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 STON1Q9Y6Q2 735 aa13.52□□□□□ -0.25
GTF3A-209ENST00000640289 BDP1A6H8Y1 2624 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 NCOR1O75376 2440 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 CCDC66A2RUB6 948 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 DDX3YO15523 660 aaKnown RBP13.51□□□□□ -0.25
GTF3A-209ENST00000640289 ZSCAN12O43309 604 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 ATG13O75143 517 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 ZMPSTE24O75844 475 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 MT-CO1P00395 513 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 ASLP04424 464 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 COL9A1P20849 921 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 PRKCHP24723 683 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 NTSR1P30989 418 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 PEX5P50542 639 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 DNA2P51530 1060 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 SULT2A1Q06520 285 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 ODF2Q5BJF6 829 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 AFMIDQ63HM1 303 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 NCBP2-AS2Q69YL0 99 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 TMEM92Q6UXU6 159 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 LEKR1Q6ZMV7 388 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 ARHGAP36Q6ZRI8 547 aa13.51□□□□□ -0.25
GTF3A-209ENST00000640289 TRMT11Q7Z4G4 463 aaKnown RBP13.51□□□□□ -0.25
GTF3A-209ENST00000640289 ZNF354CQ86Y25 554 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms