RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 GCOM2Q9BZD3 368 aaPredicted RBP14.35□□□□□ -0.11
COL6A1-207ENST00000612273 PDP2Q9P2J9 529 aa14.35□□□□□ -0.11
COL6A1-207ENST00000612273 MORF4L1Q9UBU8 362 aa14.35□□□□□ -0.11
COL6A1-207ENST00000612273 TLK1Q9UKI8 766 aa14.35□□□□□ -0.11
COL6A1-207ENST00000612273 RLFQ13129 1914 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 HUS1O60921 280 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 CSPG5O95196 566 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 MT-CYBP00156 380 aaPredicted RBP14.34□□□□□ -0.11
COL6A1-207ENST00000612273 USP17L7P0C7H9 530 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 HNRNPLP14866 589 aaKnown RBP eCLIP14.34□□□□□ -0.11
COL6A1-207ENST00000612273 CRABP2P29373 138 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 SPRP35270 261 aaPredicted RBP14.34□□□□□ -0.11
COL6A1-207ENST00000612273 FOLH1Q04609 750 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 FLOT2Q14254 428 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 PDK1Q15118 436 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 SH3D19Q5HYK7 790 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 SPATA24Q86W54 205 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 PCDH20Q8N6Y1 951 aaKnown RBP14.34□□□□□ -0.11
COL6A1-207ENST00000612273 NPWQ8N729 165 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 NPAS2Q99743 824 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 FTHL17Q9BXU8 183 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 FZD10Q9ULW2 581 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 RUVBL2Q9Y230 463 aaKnown RBP14.34□□□□□ -0.11
COL6A1-207ENST00000612273 MEIS3P2A8K0S8 358 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 I6L893 689 aaPredicted RBP14.34□□□□□ -0.11
COL6A1-207ENST00000612273 DFFAO00273 331 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 GSTA2P09210 222 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 CHRM1P11229 460 aaPredicted RBP14.34□□□□□ -0.11
COL6A1-207ENST00000612273 GRK2P25098 689 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 GRIA4P48058 902 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 PDK3Q15120 406 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 NRF1Q16656 503 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 LSM12Q3MHD2 195 aaKnown RBP14.34□□□□□ -0.11
COL6A1-207ENST00000612273 LIN52Q52LA3 116 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 ZNF484Q5JVG2 852 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 KCNMB4Q86W47 210 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 DNAJB3Q8WWF6 145 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 IFT43Q96FT9 208 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 VPS39Q96JC1 886 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 ULBP1Q9BZM6 244 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 VRTNQ9H8Y1 702 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 DDX18Q9NVP1 670 aaKnown RBP14.34□□□□□ -0.11
COL6A1-207ENST00000612273 ADA2Q9NZK5 511 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 DTNAQ9Y4J8 743 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 SSC5DA1L4H1 1573 aa14.34□□□□□ -0.11
COL6A1-207ENST00000612273 YJEFN3A6XGL0 299 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 TRIM13O60858 407 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 PTPN9P43378 593 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 RAB27AP51159 221 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 INHBEP58166 350 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 ZBTB17Q13105 803 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 CNGA3Q16281 694 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 ANKRD20A4Q4UJ75 823 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 TMCO4Q5TGY1 634 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 OSTM1Q86WC4 334 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 PDSS2Q86YH6 399 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 SLC41A1Q8IVJ1 513 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 FBXW8Q8N3Y1 598 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 IPMKQ8NFU5 416 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 CDH19Q9H159 772 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 OCEL1Q9H607 264 aa14.33□□□□□ -0.11
COL6A1-207ENST00000612273 POLR2AP24928 1970 aaKnown RBP14.33□□□□□ -0.12
COL6A1-207ENST00000612273 SMIM28A0A1B0GU29 152 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 ZNF195O14628 629 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 DYNC1LI2O43237 492 aaPredicted RBP14.33□□□□□ -0.12
COL6A1-207ENST00000612273 VAPBO95292 243 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 IL1BP01584 269 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 PTPN3P26045 913 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 PMLP29590 882 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 MAGEA6P43360 314 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 SLC26A2P50443 739 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 AFF1P51825 1210 aaKnown RBP14.33□□□□□ -0.12
COL6A1-207ENST00000612273 SEPT6Q14141 434 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 POTEAQ6S8J7 498 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 AEBP2Q6ZN18 517 aaPredicted RBP14.33□□□□□ -0.12
COL6A1-207ENST00000612273 OPTNQ96CV9 577 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 ACE2Q9BYF1 805 aaPredicted RBP14.33□□□□□ -0.12
COL6A1-207ENST00000612273 GTSE1Q9NYZ3 720 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 ZDHHC2Q9UIJ5 367 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 SLC4A7Q9Y6M7 1214 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 PIK3R1P27986 724 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 ALDH1A3P47895 512 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 SNX16P57768 344 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 MPP1Q00013 466 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 CYTH1Q15438 398 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 SLC25A52Q3SY17 297 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 DPP9Q86TI2 863 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 TMEM40Q8WWA1 233 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 KCNN1Q92952 543 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 OLFM3Q96PB7 478 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 RBBP8Q99708 897 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 ILKAPQ9H0C8 392 aaPredicted RBP14.33□□□□□ -0.12
COL6A1-207ENST00000612273 LRRC40Q9H9A6 602 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 CHST12Q9NRB3 414 aa14.33□□□□□ -0.12
COL6A1-207ENST00000612273 UQCRBP14927 111 aa14.32□□□□□ -0.12
COL6A1-207ENST00000612273 GRM5P41594 1212 aa14.32□□□□□ -0.12
COL6A1-207ENST00000612273 ART3Q13508 389 aa14.32□□□□□ -0.12
COL6A1-207ENST00000612273 NOMO2Q5JPE7 1267 aa14.32□□□□□ -0.12
COL6A1-207ENST00000612273 C6orf52Q5T4I8 152 aa14.32□□□□□ -0.12
COL6A1-207ENST00000612273 TIFABQ6ZNK6 161 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms