RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 FAM172AQ8WUF8 416 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 IRGQQ8WZA9 623 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 HSPH1Q92598 858 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 ERLEC1Q96DZ1 483 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 SLITRK1Q96PX8 696 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 HEMGNQ9BXL5 484 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 FRMD8P1Q9BZ68 369 aaPredicted RBP10.49□□□□□ -0.73
SS18-207ENST00000577636 LRRC19Q9H756 370 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 PNPLA8Q9NP80 782 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 POLMQ9NP87 494 aaPredicted RBP10.49□□□□□ -0.73
SS18-207ENST00000577636 CNGB3Q9NQW8 809 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 GDF3Q9NR23 364 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 RRN3Q9NYV6 651 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 PCSK1NQ9UHG2 260 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 PCYOX1Q9UHG3 505 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 DMGDHQ9UI17 866 aaKnown RBP10.49□□□□□ -0.73
SS18-207ENST00000577636 MBD1Q9UIS9 605 aaPredicted RBP10.49□□□□□ -0.73
SS18-207ENST00000577636 EFR3BQ9Y2G0 817 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 MSRB2Q9Y3D2 182 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 NEUROG3Q9Y4Z2 214 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 CHD6Q8TD26 2715 aa10.49□□□□□ -0.73
SS18-207ENST00000577636 SGK1O00141 431 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 NDC80O14777 642 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 TTI1O43156 1089 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 ZBED1O96006 694 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 APODP05090 189 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 RARAP10276 462 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 ITPKAP23677 461 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 NOS2P35228 1153 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 GRIK1P39086 918 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 P2RY2P41231 377 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 MATKP42679 507 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 SULT1E1P49888 294 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 MRPS21P82921 87 aaKnown RBP10.48□□□□□ -0.73
SS18-207ENST00000577636 ATP11AP98196 1134 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 SLC25A11Q02978 314 aaKnown RBP10.48□□□□□ -0.73
SS18-207ENST00000577636 TFDP2Q14188 446 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 CCNG2Q16589 344 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 CCDC14Q49A88 953 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 LYSMD4Q5XG99 296 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 KAZNQ674X7 775 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 FAM171BQ6P995 826 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 SND1Q7KZF4 910 aaKnown RBP eCLIP10.48□□□□□ -0.73
SS18-207ENST00000577636 STRADAQ7RTN6 431 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 GSTA5Q7RTV2 222 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 JAMLQ86YT9 394 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 ATL2Q8NHH9 583 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 CCHCR1Q8TD31 782 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 TEKT4Q8WW24 435 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 TRMT2BQ96GJ1 504 aaKnown RBP10.48□□□□□ -0.73
SS18-207ENST00000577636 CCDC114Q96M63 670 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 CFAP57Q96MR6 1250 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 ERP44Q9BS26 406 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 CALN1Q9BXU9 219 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 POPDC2Q9HBU9 364 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 TMEM51Q9NW97 253 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 SMPD4Q9NXE4 827 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 EVLQ9UI08 416 aaPredicted RBP10.48□□□□□ -0.73
SS18-207ENST00000577636 SCN1AP35498 2009 aa10.48□□□□□ -0.73
SS18-207ENST00000577636 BAHCC1Q9P281 2608 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 hCG_1818297A0A087WSY0 165 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 TCRBV21S2A2A0A5A6 115 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 TAF4O00268 1085 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 TNFRSF10BO14763 440 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 OPHN1O60890 802 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 F9P00740 461 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 BDNFP23560 247 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 KDELR1P24390 212 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 CDKN2BP42772 138 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 CDH6P55285 790 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 FAM193AP78312 1265 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 MRPS25P82663 173 aaKnown RBP10.47□□□□□ -0.73
SS18-207ENST00000577636 ZXDBP98169 803 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 KDSRQ06136 332 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 MESP2Q0VG99 397 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 IFRD2Q12894 506 aaPredicted RBP10.47□□□□□ -0.73
SS18-207ENST00000577636 CALCOCO2Q13137 446 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 NNTQ13423 1086 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 BYSLQ13895 437 aaKnown RBP10.47□□□□□ -0.73
SS18-207ENST00000577636 DHCR24Q15392 516 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 SMTNL2Q2TAL5 461 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 ARL13BQ3SXY8 428 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 SLC25A52Q3SY17 297 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 DCAF6Q58WW2 860 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 EOGTQ5NDL2 527 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 BEND6Q5SZJ8 279 aaPredicted RBP10.47□□□□□ -0.73
SS18-207ENST00000577636 VSTM1Q6UX27 236 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 MFSD7Q6UXD7 560 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 PAQR9Q6ZVX9 377 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 RFX6Q8HWS3 928 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 ADGRG2Q8IZP9 1017 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 NAT16Q8N8M0 369 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 IL17RCQ8NAC3 791 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 BBOF1Q8ND07 529 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 OR2I1PQ8NGU4 316 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 C1orf54Q8WWF1 131 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 FUBP3Q96I24 572 aaKnown RBP eCLIP10.47□□□□□ -0.73
SS18-207ENST00000577636 MYRFLQ96LU7 910 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 SMOQ99835 787 aa10.47□□□□□ -0.73
SS18-207ENST00000577636 FAM129AQ9BZQ8 928 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms