RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 BMP2KLQ5H9B9 411 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 TMEM164Q5U3C3 297 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 SPNS3Q6ZMD2 512 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 GCNT7Q6ZNI0 430 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 IL22RA1Q8N6P7 574 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 PPP1R13BQ96KQ4 1090 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 CMKLR1Q99788 373 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 KLF15Q9UIH9 416 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 STOML2Q9UJZ1 356 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 PCDHA5Q9Y5H7 936 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 PCSK5Q92824 1860 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 ARHGAP10A1A4S6 786 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 HHLA1C9JL84 531 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 PRLRP16471 622 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 HNRNPA2B1P22626 353 aaKnown RBP16.78■□□□□ 0.28
VPS53-218ENST00000575207 NOS2P35228 1153 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 CCL7P80098 99 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 EFEMP1Q12805 493 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 ELAVL3Q14576 367 aaKnown RBP16.78■□□□□ 0.28
VPS53-218ENST00000575207 DUOXA2Q1HG44 320 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 AGBL4Q5VU57 503 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 Q6ZSR6 202 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 PARGQ86W56 976 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 MCEMP1Q8IX19 187 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 PRR7Q8TB68 274 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 PLIN2Q99541 437 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 RABGEF1Q9UJ41 708 aa16.78■□□□□ 0.28
VPS53-218ENST00000575207 SPTY2D1-AS1A0A0U1RR47 76 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 TCP11X1B4DZS4 312 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 CST3P01034 146 aaPredicted RBP16.77■□□□□ 0.28
VPS53-218ENST00000575207 AKT2P31751 481 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 CSKP41240 450 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 CLDN2P57739 230 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 TNNC1P63316 161 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 CDC20Q12834 499 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 WDR72Q3MJ13 1102 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 MPP7Q5T2T1 576 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 ASB18Q6ZVZ8 466 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 CCDC13Q8IYE1 715 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 TTC13Q8NBP0 860 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 LMX1AQ8TE12 382 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 HVCN1Q96D96 273 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 TNIP3Q96KP6 325 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 ZHX3Q9H4I2 956 aa16.77■□□□□ 0.28
VPS53-218ENST00000575207 INTS6Q9UL03 887 aaKnown RBP16.77■□□□□ 0.28
VPS53-218ENST00000575207 PPP1R37O75864 691 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 PRPF6O94906 941 aaKnown RBP16.76■□□□□ 0.27
VPS53-218ENST00000575207 RPLP0P05388 317 aaKnown RBP16.76■□□□□ 0.27
VPS53-218ENST00000575207 SRPRAP08240 638 aaKnown RBP16.76■□□□□ 0.27
VPS53-218ENST00000575207 GARTP22102 1010 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 ARSDP51689 593 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 MRPL49Q13405 166 aaKnown RBP16.76■□□□□ 0.27
VPS53-218ENST00000575207 TRIP4Q15650 581 aaPredicted RBP16.76■□□□□ 0.27
VPS53-218ENST00000575207 NEK5Q6P3R8 708 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 ZNF720Q7Z2F6 126 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 CCDC186Q7Z3E2 898 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 GPBP1Q86WP2 473 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 SDR16C5Q8N3Y7 309 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 PLD4Q96BZ4 506 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 CGRRF1Q99675 332 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 FZD3Q9NPG1 666 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 PDRG1Q9NUG6 133 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 MARCH2Q9P0N8 246 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 ERVW-1Q9UQF0 538 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 KIF3AQ9Y496 699 aa16.76■□□□□ 0.27
VPS53-218ENST00000575207 GOLGA8IPA6NC78 632 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 GOLGA8JA6NMD2 632 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 A6NNZ2 444 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 MKRN2OSH3BPM6 223 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 DUX1O43812 170 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 JUNDP17535 347 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 OAS2P29728 719 aaKnown RBP16.75■□□□□ 0.27
VPS53-218ENST00000575207 UGT1A3P35503 534 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 TAS2R38P59533 333 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 ZNF284Q2VY69 593 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 DEFB109BQ30KR1 87 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 ESRP1Q6NXG1 681 aaKnown RBP16.75■□□□□ 0.27
VPS53-218ENST00000575207 TRAPPC11Q7Z392 1133 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 ZNF557Q8N988 423 aaPredicted RBP16.75■□□□□ 0.27
VPS53-218ENST00000575207 SLC2A14Q8TDB8 520 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 KLK6Q92876 244 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 BMFQ96LC9 184 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 C5orf34Q96MH7 638 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 STRA6Q9BX79 667 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 LRRN3Q9H3W5 708 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 PNPLA8Q9NP80 782 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 SLCO3A1Q9UIG8 710 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 ITGB1BP2Q9UKP3 347 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 STRIP2Q9ULQ0 834 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 HS3ST3A1Q9Y663 406 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 DCHS2Q6V1P9 2916 aa16.75■□□□□ 0.27
VPS53-218ENST00000575207 A0A1W2PQU0 124 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 LMO7DNF2Z398 122 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 STAU1O95793 577 aaKnown RBP16.74■□□□□ 0.27
VPS53-218ENST00000575207 PRKAR1AP10644 381 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 PRPHP41219 470 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 SGSHP51688 502 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 KIF11P52732 1056 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 CNTN1Q12860 1018 aa16.74■□□□□ 0.27
VPS53-218ENST00000575207 TMEM119Q4V9L6 283 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms