RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TARSL2A2RTX5 802 aaKnown RBP18.24■□□□□ 0.51
HDDC3-205ENST00000559898 K7ERQ8 282 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 MOCS3O95396 460 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 WNT1P04628 370 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 PPP2CBP62714 309 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 PPP2CAP67775 309 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 ZBTB16Q05516 673 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 ST3GAL2Q16842 350 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 C15orf59Q2T9L4 293 aaPredicted RBP18.24■□□□□ 0.51
HDDC3-205ENST00000559898 TTC31Q49AM3 519 aaPredicted RBP18.24■□□□□ 0.51
HDDC3-205ENST00000559898 PRAMEF14Q5SWL7 426 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 KIAA0895LQ68EN5 471 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 NAXDQ8IW45 347 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 PNPLA1Q8N8W4 532 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 KDM1BQ8NB78 822 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 SLC6A18Q96N87 628 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 WDCPQ9H6R7 721 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 BTBD3Q9Y2F9 522 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 ACTL7AQ9Y615 435 aa18.24■□□□□ 0.51
HDDC3-205ENST00000559898 A0A0D9SEW6 157 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 CBFA2T3O75081 653 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 CYP1A1P04798 512 aaPredicted RBP18.23■□□□□ 0.51
HDDC3-205ENST00000559898 ZNF18P17022 549 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 IL9RQ01113 521 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 PTP4A2Q12974 167 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 SYCP1Q15431 976 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 SLC25A52Q3SY17 297 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 CT47A1Q5JQC4 288 aaPredicted RBP18.23■□□□□ 0.51
HDDC3-205ENST00000559898 LINGO4Q6UY18 593 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 Q6ZVU0 165 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 TFAP2DQ7Z6R9 452 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 FAM131BQ86XD5 332 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 ZDHHC17Q8IUH5 632 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 CHCHD4Q8N4Q1 142 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 PGAP3Q96FM1 320 aaPredicted RBP18.23■□□□□ 0.51
HDDC3-205ENST00000559898 SLC32A1Q9H598 525 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 CAAP1Q9H8G2 361 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 SGK2Q9HBY8 427 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 ZNF212Q9UDV6 495 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 TBC1D30Q9Y2I9 924 aa18.23■□□□□ 0.51
HDDC3-205ENST00000559898 PLXNB3Q9ULL4 1909 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.22■□□□□ 0.51
HDDC3-205ENST00000559898 SMAD6O43541 496 aaKnown RBP18.22■□□□□ 0.51
HDDC3-205ENST00000559898 RTN2O75298 545 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 IL1BP01584 269 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 CTSLP07711 333 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 ATP1A3P13637 1013 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 SOX5P35711 763 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 ATP11AP98196 1134 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 CDR2Q01850 454 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 ZNF177Q13360 481 aaPredicted RBP18.22■□□□□ 0.51
HDDC3-205ENST00000559898 SLC12A1Q13621 1099 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 DLG2Q15700 870 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 ACCSLQ4AC99 568 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 TTC39BQ5VTQ0 682 aaPredicted RBP18.22■□□□□ 0.51
HDDC3-205ENST00000559898 USP30Q70CQ3 517 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 OR7D4Q8NG98 312 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 OMDQ99983 421 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 C11orf70Q9BRQ4 267 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 PCED1AQ9H1Q7 454 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 TM7SF3Q9NS93 570 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 TMEM63CQ9P1W3 806 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 LIMA1Q9UHB6 759 aaKnown RBP18.22■□□□□ 0.51
HDDC3-205ENST00000559898 ANKRD6Q9Y2G4 727 aa18.22■□□□□ 0.51
HDDC3-205ENST00000559898 CEP295Q9C0D2 2601 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 DRGXA6NNA5 263 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 E9PAM4 449 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 H0Y8X5 98 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 ATP9BO43861 1147 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 BNIP3LO60238 219 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 SRGAP2O75044 1071 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 LSM8O95777 96 aaKnown RBP18.21■□□□□ 0.51
HDDC3-205ENST00000559898 SRCP12931 536 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 RRM1P23921 792 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 CD27P26842 260 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 SCNN1AP37088 669 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 ADPRHP54922 357 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 CDH4P55283 916 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 TRIP6Q15654 476 aaKnown RBP18.21■□□□□ 0.51
HDDC3-205ENST00000559898 CDO1Q16878 200 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 BRMS1LQ5PSV4 323 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.21■□□□□ 0.51
HDDC3-205ENST00000559898 SLCO6A1Q86UG4 719 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 SH2D3CQ8N5H7 860 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 OR14C36Q8NHC7 312 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 NDFIP2Q9NV92 336 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 ADAMTS1Q9UHI8 967 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 VPS51Q9UID3 782 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 VPS28Q9UK41 221 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 PCOLCE2Q9UKZ9 415 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 STAP1Q9ULZ2 295 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 NCKAP1Q9Y2A7 1128 aa18.21■□□□□ 0.51
HDDC3-205ENST00000559898 PTPRBP23467 1997 aa18.21■□□□□ 0.5
HDDC3-205ENST00000559898 ZFHX4Q86UP3 3567 aa18.2■□□□□ 0.5
HDDC3-205ENST00000559898 CACNA1BQ00975 2339 aa18.2■□□□□ 0.5
HDDC3-205ENST00000559898 IGLV3-10A0A075B6K4 115 aa18.2■□□□□ 0.5
HDDC3-205ENST00000559898 A0A1W2PPC4 97 aa18.2■□□□□ 0.5
HDDC3-205ENST00000559898 FAM72CH0Y354 149 aa18.2■□□□□ 0.5
HDDC3-205ENST00000559898 RNASEH1O60930 286 aaKnown RBP18.2■□□□□ 0.5
HDDC3-205ENST00000559898 CLDN11O75508 207 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms