RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MGAT5Q09328 741 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 PEX6Q13608 980 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 POU4F3Q15319 338 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TRMT5Q32P41 509 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 KBTBD12Q3ZCT8 623 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CDCP2Q5VXM1 449 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 HEATR6Q6AI08 1181 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TTC33Q6PID6 262 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SV2AQ7L0J3 742 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 LPCAT2Q7L5N7 544 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 LRRTM3Q86VH5 581 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZBTB8OSQ8IWT0 167 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 UBA3Q8TBC4 463 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ETNPPLQ8TBG4 499 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 FEZF2Q8TBJ5 459 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TLCD1Q96CP7 247 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 HERPUD2Q9BSE4 406 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TAGLN3Q9UI15 199 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 HIF3AQ9Y2N7 669 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 RPTORQ8N122 1335 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF638Q14966 1978 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 C1orf232A0A0U1RR37 186 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CAPN8A6NHC0 703 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SYCE1LA8MT33 242 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 BTBD19C9JJ37 291 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 F8VP50 259 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TNFRSF10CO14798 259 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TM4SF5O14894 197 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 XPOTO43592 962 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 TBX10O75333 385 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 E2F6O75461 281 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CALB1P05937 261 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ANPEPP15144 967 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 PSMC3P17980 439 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CCR3P51677 355 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 HDAC4P56524 1084 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SPIRE1Q08AE8 756 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ITGA9Q13797 1035 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SF1Q15637 639 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 MAPK11Q15759 364 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SLC45A4Q5BKX6 768 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ACSBG2Q5FVE4 666 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF667Q5HYK9 610 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 RNF43Q68DV7 783 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 PPP1R2P3Q6NXS1 205 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 C4orf50Q6ZRC1 276 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CLVS1Q8IUQ0 354 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 PPIL6Q8IXY8 311 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ZC3H3Q8IXZ2 948 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 SEC14L1Q92503 715 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 APOL2Q9BQE5 337 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 MED10Q9BTT4 135 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 DNAI2Q9GZS0 605 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 KLHL25Q9H0H3 589 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 CCDC134Q9H6E4 229 aa5.61□□□□□ -1.51
LIMA1-203ENST00000547825 MYH9P35579 1960 aaKnown RBP5.61□□□□□ -1.51
LIMA1-203ENST00000547825 ARHGEF37A1IGU5 675 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 BLACEA4D250 179 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 C5orf60A6NFR6 353 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 KBTBD13C9JR72 458 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 AVILO75366 819 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 RTN3O95197 1032 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 KLHL2O95198 593 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 LYNP07948 512 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 SNRPBP14678 240 aaKnown RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 AMPD1P23109 780 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 NTF4P34130 210 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 NKX3-2P78367 333 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 CCNG2Q16589 344 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 TRIM16LQ309B1 348 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 Q4G0T1 1027 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 TSHZ1Q6ZSZ6 1077 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 MARK2Q7KZI7 788 aaKnown RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 GPD1LQ8N335 351 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 GALNT11Q8NCW6 608 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 MAGEC3Q8TD91 643 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 FAM136AQ96C01 138 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 NRBF2Q96F24 287 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ANKRD36BP1Q96IX9 119 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 CDRT15Q96T59 188 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 LRMDAQ9H2I8 198 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 MMADHCQ9H3L0 296 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 RMI1Q9H9A7 625 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 EBF2Q9HAK2 575 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 PREBQ9HCU5 417 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 JPH1Q9HDC5 661 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 FAM49BQ9NUQ9 324 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 KAT6AQ92794 2004 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 SAC3D1A6NKF1 404 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 SRRM3A6NNA2 597 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 PRR5-ARHGAP8B1AHC4 643 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 SH3BP5O60239 455 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 PLA2G6O60733 806 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 EDF1O60869 148 aaKnown RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ADAM11O75078 769 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 SNHG28P0DPA3 235 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 VAV1P15498 845 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 IREB2P48200 963 aaKnown RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 EIF2B2P49770 351 aaKnown RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms