RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TFAP2BQ92481 460 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 SMARCD1Q96GM5 515 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 HIC2Q96JB3 615 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 CNDP2Q96KP4 475 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 SYNCQ9H7C4 482 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 KRT82Q9NSB4 513 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 PLK2Q9NYY3 685 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 ADAMTS1Q9UHI8 967 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 NOCTQ9UK39 431 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 SSUH2Q9Y2M2 353 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 AHCTF1Q8WYP5 2266 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 RELNP78509 3460 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 O00370 1275 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 AP1G2O75843 785 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 PENKP01210 267 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 FECHP22830 423 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 PRKCHP24723 683 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 NSFP46459 744 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 CSRP3P50461 194 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 SNX16P57768 344 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 CCZ1BP86790 482 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 CCZ1P86791 482 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 FMO1Q01740 532 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 BST2Q10589 180 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 ZNF234Q14588 700 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 SLC18A3Q16572 532 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 INAVAQ3KP66 663 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 LCLAT1Q6UWP7 414 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 Q6ZNB5 142 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 KIAA1328Q86T90 577 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 DCBLD1Q8N8Z6 715 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 UBA3Q8TBC4 463 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 SAP25Q8TEE9 199 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 RFFLQ8WZ73 363 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 SNX19Q92543 992 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 BHMTQ93088 406 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 PIWIL1Q96J94 861 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 SPTLC3Q9NUV7 552 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 PCDHGC3Q9UN70 934 aa12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 EPN1Q9Y6I3 576 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 USP9YO00507 2555 aaPredicted RBP12.94□□□□□ -0.34
CLSTN3-208ENST00000538933 FAM170AA1A519 330 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 EIF3CLB5ME19 914 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 VILLO15195 856 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 SLC28A2O43868 658 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 SYNCRIPO60506 623 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 TLR5O60602 858 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 NDUFA10O95299 355 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 LSM8O95777 96 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 SETSIPP0DME0 302 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 ACADMP11310 421 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 CHRNB2P17787 502 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 KRT83P78385 493 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 CAMK2GQ13555 558 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 COLEC12Q5KU26 742 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 ARHGAP40Q5TG30 622 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 FYB2Q5VWT5 728 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 NAA35Q5VZE5 725 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 TMEM215Q68D42 235 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 ALKBH5Q6P6C2 394 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 CACUL1Q86Y37 369 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 TMEM139Q8IV31 216 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 ANKRD52Q8NB46 1076 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 C1orf131Q8NDD1 294 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 MED8Q96G25 268 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 EIF3CQ99613 913 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 ST7Q9NRC1 585 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 COMMD8Q9NX08 183 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 OSER1Q9NX31 292 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 ELOVL2Q9NXB9 296 aa12.93□□□□□ -0.34
CLSTN3-208ENST00000538933 A0A087X0T9 212 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 DDX3XO00571 662 aaKnown RBP eCLIP12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 RTN2O75298 545 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 SEMA4FO95754 770 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 KLKB1P03952 638 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 WNT1P04628 370 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 IGHV4-34P06331 123 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 FAM228BP0C875 321 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 KRT10P13645 584 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 MAGEA1P43355 309 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 SLC5A3P53794 718 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 MAP3K7CLP57077 242 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 TMPRSS3P57727 454 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 SPTAN1Q13813 2472 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 CLEC16AQ2KHT3 1053 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 DENND1BQ6P3S1 775 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 RAD9BQ6WBX8 426 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 FUKQ8N0W3 1084 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 ZNF248Q8NDW4 579 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 ZMIZ2Q8NF64 920 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 CPA5Q8WXQ8 436 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 SORCS1Q8WY21 1168 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 ELF4Q99607 663 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 DUSP16Q9BY84 665 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 MIS12Q9H081 205 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 LHX5Q9H2C1 402 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 KCNF1Q9H3M0 494 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 LRRC4Q9HBW1 653 aa12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 DMAP1Q9NPF5 467 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-208ENST00000538933 CYLDQ9NQC7 956 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms