RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 UBE4AQ14139 1066 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 TWIST1Q15672 202 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 Q4G0T1 1027 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 XRRA1Q6P2D8 792 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 RBM44Q6ZP01 1051 aaKnown RBP3.94□□□□□ -1.78
USP48-215ENST00000534705 KRT27Q7Z3Y8 459 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 TRABD2AQ86V40 505 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 GATAD2AQ86YP4 633 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 UEVLDQ8IX04 471 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 NRSN1Q8IZ57 195 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 IPO4Q8TEX9 1081 aaKnown RBP3.94□□□□□ -1.78
USP48-215ENST00000534705 WDR60Q8WVS4 1066 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 NPIPB3Q92617 1050 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 MUL1Q969V5 352 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 MARK4Q96L34 752 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 CDK19Q9BWU1 502 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 SPRTNQ9H040 489 aaPredicted RBP3.94□□□□□ -1.78
USP48-215ENST00000534705 AGO4Q9HCK5 861 aaKnown RBP3.94□□□□□ -1.78
USP48-215ENST00000534705 CHST12Q9NRB3 414 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 ASNSD1Q9NWL6 643 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 PCDHB7Q9Y5E2 793 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 RGPD1P0DJD0 1748 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 PEAK1Q9H792 1746 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 NFAT5O94916 1531 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 CPSF1Q10570 1443 aaKnown RBP3.94□□□□□ -1.78
USP48-215ENST00000534705 PPIP5K1Q6PFW1 1433 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 CACNA1IQ9P0X4 2223 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 CAMTA1Q9Y6Y1 1673 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 ITGB4P16144 1822 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 TONSLQ96HA7 1378 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 LRRC37A3O60309 1634 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 C16orf96A6NNT2 1141 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 M0QZQ0 153 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 NKX2-8O15522 239 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 FFAR2O15552 330 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 CREB3O43889 395 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 TLR2O60603 784 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 TFEBP19484 476 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 IDUAP35475 653 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 ZNF84P51523 738 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 TLE3Q04726 772 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 OS9Q13438 667 aaPredicted RBP3.93□□□□□ -1.78
USP48-215ENST00000534705 BIRC2Q13490 618 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 STARD3Q14849 445 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 ELF2Q15723 593 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 P3H1Q32P28 736 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 KRTAP5-1Q6L8H4 278 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 TMED8Q6PL24 325 aaPredicted RBP3.93□□□□□ -1.78
USP48-215ENST00000534705 KYAT3Q6YP21 454 aaKnown RBP3.93□□□□□ -1.78
USP48-215ENST00000534705 TFAP2DQ7Z6R9 452 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 PIP4P1Q86T03 277 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 MORC1Q86VD1 984 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 RFX6Q8HWS3 928 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 SAMD3Q8N6K7 520 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 MPLKIPQ8TAP9 179 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 FAM71BQ8TC56 605 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 ZFPM2Q8WW38 1151 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 IGFBPL1Q8WX77 278 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 EID2BQ96D98 161 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 C18orf8Q96DM3 657 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 TM2D2Q9BX73 214 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 TRNAU1APQ9NX07 287 aaKnown RBP3.93□□□□□ -1.78
USP48-215ENST00000534705 IGSF9Q9P2J2 1179 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 RGS12O14924 1447 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 USP6P35125 1406 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 RREB1Q92766 1687 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 ACEP12821 1306 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 AFF2P51816 1311 aa3.93□□□□□ -1.78
USP48-215ENST00000534705 ARHGEF10O15013 1369 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 RGPD3A6NKT7 1758 aaPredicted RBP3.92□□□□□ -1.78
USP48-215ENST00000534705 RGPD4Q7Z3J3 1758 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 LOC105369274A0A096LPK9 316 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 LOC102723532A0A0G2JNH3 316 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 C3orf70A6NLC5 250 aaPredicted RBP3.92□□□□□ -1.78
USP48-215ENST00000534705 C2CD4BA6NLJ0 364 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 ERVV-2B6SEH9 535 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 SYT5O00445 386 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 SOCS2O14508 198 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 ENO1P06733 434 aaKnown RBP3.92□□□□□ -1.78
USP48-215ENST00000534705 SETSIPP0DME0 302 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 ALADP13716 330 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 IGFBP2P18065 325 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 HOXA7P31268 230 aaPredicted RBP3.92□□□□□ -1.78
USP48-215ENST00000534705 IL6STP40189 918 aaPredicted RBP3.92□□□□□ -1.78
USP48-215ENST00000534705 SOX2P48431 317 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 VPS41P49754 854 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 CDK7P50613 346 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 TNFAIP2Q03169 654 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 GAB1Q13480 694 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 PTK2BQ14289 1009 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 RABEP1Q15276 862 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 RALBP1Q15311 655 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 AAK1Q2M2I8 961 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 KRTAP27-1Q3LI81 207 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 TRIM60Q495X7 471 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 HSP90AB4PQ58FF6 505 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 EARS2Q5JPH6 523 aaKnown RBP3.92□□□□□ -1.78
USP48-215ENST00000534705 WDR93Q6P2C0 686 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 SHC4Q6S5L8 630 aa3.92□□□□□ -1.78
USP48-215ENST00000534705 C16orf89Q6UX73 402 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms