RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CHRDL2Q6WN34 429 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 MTERF4Q7Z6M4 381 aaKnown RBP21.51■■□□□ 1.03
VPS28-208ENST00000527797 SH3RF2Q8TEC5 729 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 TMA16Q96EY4 203 aaKnown RBP21.51■■□□□ 1.03
VPS28-208ENST00000527797 PWWP2AQ96N64 755 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 ACBD3Q9H3P7 528 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 TDP1Q9NUW8 608 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 OBSL1O75147 1896 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 A0A1B0GVM2 712 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 E2F8A0AVK6 867 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 TCAF2A6NFQ2 919 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 JCHAINP01591 159 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 CCNB1P14635 433 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 SGSHP51688 502 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 IFI35P80217 286 aaPredicted RBP21.51■■□□□ 1.03
VPS28-208ENST00000527797 ANO4Q32M45 955 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 SPDYCQ5MJ68 293 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 ZNF354CQ86Y25 554 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 CPXM2Q8N436 756 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 HJURPQ8NCD3 748 aaPredicted RBP21.51■■□□□ 1.03
VPS28-208ENST00000527797 UBLCP1Q8WVY7 318 aaPredicted RBP21.51■■□□□ 1.03
VPS28-208ENST00000527797 EXOC4Q96A65 974 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 MAGEH1Q9H213 219 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 IGSF9Q9P2J2 1179 aa21.51■■□□□ 1.03
VPS28-208ENST00000527797 TCRBV7S3A2A0A539 114 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 E7EVH7 732 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 TBL1XO60907 577 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 CEBPBP17676 345 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 HSD17B3P37058 310 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 MAGEA6P43360 314 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 ZBTB17Q13105 803 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 SEMA5AQ13591 1074 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 ITPRIPL1Q6GPH6 555 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 PPP1R21Q6ZMI0 780 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 SETD3Q86TU7 594 aaPredicted RBP21.5■■□□□ 1.03
VPS28-208ENST00000527797 BBS7Q8IWZ6 715 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 ZSCAN18Q8TBC5 510 aaPredicted RBP21.5■■□□□ 1.03
VPS28-208ENST00000527797 USP13Q92995 863 aaPredicted RBP21.5■■□□□ 1.03
VPS28-208ENST00000527797 ZNF576Q9H609 170 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 CCL26Q9Y258 94 aa21.5■■□□□ 1.03
VPS28-208ENST00000527797 CEP290O15078 2479 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 GOLGA8MH3BSY2 632 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 GFRA2O00451 464 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 ZBTB24O43167 697 aaPredicted RBP21.49■■□□□ 1.03
VPS28-208ENST00000527797 TMEM63AO94886 807 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 ARL4CP56559 192 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 GNA12Q03113 381 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 SERINC3Q13530 473 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 TCEAL5Q5H9L2 206 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 RARS2Q5T160 578 aaKnown RBP21.49■■□□□ 1.03
VPS28-208ENST00000527797 CFAP58Q5T655 872 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 ALS2CLQ60I27 953 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 TMEM184AQ6ZMB5 413 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 CENPUQ71F23 418 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 ING5Q8WYH8 240 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 FATE1Q969F0 183 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 TEKT5Q96M29 485 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 AGAP3Q96P47 875 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 RBM15Q96T37 977 aaKnown RBP eCLIP21.49■■□□□ 1.03
VPS28-208ENST00000527797 PRO3102Q9H379 93 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 SP110Q9HB58 689 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 DNAJC17Q9NVM6 304 aaKnown RBP21.49■■□□□ 1.03
VPS28-208ENST00000527797 RSPH14Q9UHP6 348 aa21.49■■□□□ 1.03
VPS28-208ENST00000527797 NEBLO76041 1014 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 APRTP07741 180 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 RHOCP08134 193 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 TPSB2P20231 275 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 LMAN1P49257 510 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 HYAL1Q12794 435 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 TPSAB1Q15661 275 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 HIF1AQ16665 826 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 TRMT10CQ7L0Y3 403 aaKnown RBP21.48■■□□□ 1.03
VPS28-208ENST00000527797 RELL1Q8IUW5 271 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 EFHBQ8N7U6 833 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 TDRD5Q8NAT2 981 aaKnown RBP21.48■■□□□ 1.03
VPS28-208ENST00000527797 ITFG1Q8TB96 612 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 USP33Q8TEY7 942 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 NSMCE1Q8WV22 266 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 ARHGEF2Q92974 986 aaKnown RBP21.48■■□□□ 1.03
VPS28-208ENST00000527797 ZSWIM3Q96MP5 696 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 IL12RB2Q99665 862 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 FRMD8Q9BZ67 464 aaPredicted RBP21.48■■□□□ 1.03
VPS28-208ENST00000527797 TBC1D30Q9Y2I9 924 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 MYO7AQ13402 2215 aa21.48■■□□□ 1.03
VPS28-208ENST00000527797 ILVBLA1L0T0 632 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 PSMB4P28070 264 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 ACVRL1P37023 503 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 IL10RBQ08334 325 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 UAP1Q16222 522 aaPredicted RBP21.47■■□□□ 1.03
VPS28-208ENST00000527797 MPPE1Q53F39 396 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 SYCP2LQ5T4T6 812 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 MCUQ8NE86 351 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 MAML1Q92585 1016 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 PHACTR1Q9C0D0 580 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 GBA3Q9H227 469 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 PABPC3Q9H361 631 aaKnown RBP21.47■■□□□ 1.03
VPS28-208ENST00000527797 SEMA4AQ9H3S1 761 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 H0Y626 953 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 J3KR12 359 aa21.47■■□□□ 1.03
VPS28-208ENST00000527797 TCF3P15923 654 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms