RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 C5orf34Q96MH7 638 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 SENP7Q9BQF6 1050 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 SH2D3AQ9BRG2 576 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 EFHD1Q9BUP0 239 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 QTRT1Q9BXR0 403 aaKnown RBP4.32□□□□□ -1.72
CD44-219ENST00000525685 RNF26Q9BY78 433 aaPredicted RBP4.32□□□□□ -1.72
CD44-219ENST00000525685 STK26Q9P289 416 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 IPO11Q9UI26 975 aaKnown RBP4.32□□□□□ -1.72
CD44-219ENST00000525685 ZBTB1Q9Y2K1 713 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 PCDHA10Q9Y5I2 948 aa4.32□□□□□ -1.72
CD44-219ENST00000525685 COL16A1Q07092 1604 aaPredicted RBP4.32□□□□□ -1.72
CD44-219ENST00000525685 AHDC1Q5TGY3 1603 aaPredicted RBP4.32□□□□□ -1.72
CD44-219ENST00000525685 TULP4Q9NRJ4 1543 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 C1orf167Q5SNV9 1468 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 ROCK2O75116 1388 aaKnown RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 SPATA31A1Q5TZJ5 1347 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 LOC102724159A0A0B4J2E5 919 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 AGAP5A6NIR3 686 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 C3orf70A6NLC5 250 aaPredicted RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 H0Y3Z8 333 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 DSCR3O14972 297 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 SEPT4O43236 478 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 DHHO43323 396 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 TOM1O60784 492 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 USP12O75317 370 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 CD63P08962 238 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 CYP2A6P11509 494 aaPredicted RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 CST5P28325 142 aaPredicted RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 PAPOLAP51003 745 aaKnown RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 ARL4CP56559 192 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 TAS2R50P59544 299 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 RPL15P61313 204 aaKnown RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 PPFIA1Q13136 1202 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 MTA1Q13330 715 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 PDCLQ13371 301 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 CUL4BQ13620 913 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 KLF9Q13886 244 aaPredicted RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 PWP2Q15269 919 aaKnown RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 ANXA2RQ3ZCQ2 193 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 TANGO2Q6ICL3 276 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 SLC18B1Q6NT16 456 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 DHRS13Q6UX07 377 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 LDHAL6AQ6ZMR3 332 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 C2CD5Q86YS7 1000 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 LINC01465Q8N7H1 131 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 Q8N9P0 234 aaPredicted RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 FSIP1Q8NA03 581 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 STT3BQ8TCJ2 826 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 PIGKQ92643 395 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 KAT2BQ92831 832 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 PRAM1Q96QH2 718 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 SFXN1Q9H9B4 322 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 CHODLQ9H9P2 273 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 NRIP3Q9NQ35 241 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 ITM2CQ9NQX7 267 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 PI4KBQ9UBF8 816 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 SRP68Q9UHB9 627 aaKnown RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 KCND3Q9UK17 655 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 SLC8A2Q9UPR5 921 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 PCDHGB3Q9Y5G1 929 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 SIRT4Q9Y6E7 314 aaPredicted RBP4.31□□□□□ -1.72
CD44-219ENST00000525685 PHLPP1O60346 1717 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 KIF1AQ12756 1690 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 TOPAZ1Q8N9V7 1692 aa4.31□□□□□ -1.72
CD44-219ENST00000525685 ATP7BP35670 1465 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 ITSN1Q15811 1721 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 LOC105369274A0A096LPK9 316 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 LOC102723532A0A0G2JNH3 316 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 FAM90A18PA6NE21 464 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 FAM90A16PA6NEW6 464 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 FAM90A9PA6NNJ1 464 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 SLC38A8A6NNN8 435 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 FAM90A5PA8MXJ8 464 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 MBPP02686 304 aaPredicted RBP4.3□□□□□ -1.72
CD44-219ENST00000525685 ENO1P06733 434 aaKnown RBP4.3□□□□□ -1.72
CD44-219ENST00000525685 FAM90A15PP0C7V4 464 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 FAM90A14PP0C7W9 464 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 SFPQP23246 707 aaKnown RBP eCLIP4.3□□□□□ -1.72
CD44-219ENST00000525685 NDUFS1P28331 727 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 HOXD12P35452 270 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 ADD2P35612 726 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 RCAN1P53805 252 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 PRKAA2P54646 552 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 TLE3Q04726 772 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 RAPGEF1Q13905 1077 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 ETFDHQ16134 617 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 GPR162Q16538 588 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 TRIM60Q495X7 471 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 GALNTL6Q49A17 601 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 HSP90AB4PQ58FF6 505 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 TMEM88Q6PEY1 159 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 SLC39A5Q6ZMH5 540 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 MOGAT3Q86VF5 341 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 OR4N4Q8N0Y3 316 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 GALNT16Q8N428 558 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 TMEM57Q8N5G2 664 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 C8orf58Q8NAV2 365 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 PPM1EQ8WY54 764 aa4.3□□□□□ -1.72
CD44-219ENST00000525685 CELF1Q92879 486 aaKnown RBP4.3□□□□□ -1.72
CD44-219ENST00000525685 RPL36ALQ969Q0 106 aaKnown RBP4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms