RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 CDC6Q99741 560 aa7.07□□□□□ -1.28
SDCBP-210ENST00000522843 TM9SF2Q99805 663 aa7.07□□□□□ -1.28
SDCBP-210ENST00000522843 RNF38Q9H0F5 515 aa7.07□□□□□ -1.28
SDCBP-210ENST00000522843 PLEKHA5Q9HAU0 1116 aa7.07□□□□□ -1.28
SDCBP-210ENST00000522843 PCDHGB2Q9Y5G2 931 aa7.07□□□□□ -1.28
SDCBP-210ENST00000522843 ANKRD17O75179 2603 aaKnown RBP7.07□□□□□ -1.28
SDCBP-210ENST00000522843 BOD1L1Q8NFC6 3051 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 A0A1B0GVT2 93 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 A0A1W2PQ27 194 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 A0A1W2PQ64 194 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 A0A1W2PQC6 194 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 ANO9A1A5B4 782 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 CAPN8A6NHC0 703 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 MYMKA6NI61 221 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 CBX4O00257 560 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 KCNK3O14649 394 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 SLC16A4O15374 487 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 TNFSF14O43557 240 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 HCRTO43612 131 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 AKAP8O43823 692 aaKnown RBP7.06□□□□□ -1.28
SDCBP-210ENST00000522843 HIP1RO75146 1068 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 TOM1L1O75674 476 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 TP53P04637 393 aaPredicted RBP7.06□□□□□ -1.28
SDCBP-210ENST00000522843 C6P13671 934 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 HOXB2P14652 356 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 VAV1P15498 845 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 HDCP19113 662 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 EIF2DP41214 584 aaKnown RBP7.06□□□□□ -1.28
SDCBP-210ENST00000522843 MATKP42679 507 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 SMARCB1Q12824 385 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 RESTQ13127 1097 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 GNL2Q13823 731 aaKnown RBP7.06□□□□□ -1.28
SDCBP-210ENST00000522843 TAF1BQ53T94 588 aaPredicted RBP7.06□□□□□ -1.28
SDCBP-210ENST00000522843 EGFLAMQ63HQ2 1017 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 JADE1Q6IE81 842 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 ERICH1Q86X53 443 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 ZNF513Q8N8E2 541 aaPredicted RBP7.06□□□□□ -1.28
SDCBP-210ENST00000522843 IPO4Q8TEX9 1081 aaKnown RBP7.06□□□□□ -1.28
SDCBP-210ENST00000522843 NXPE2Q96DL1 559 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 SPATA25Q9BR10 227 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 TRIM9Q9C026 710 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 BHMT2Q9H2M3 363 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 AP5S1Q9NUS5 200 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 RAD54BQ9Y620 910 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 LRRK2Q5S007 2527 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 AHCTF1Q8WYP5 2266 aa7.06□□□□□ -1.28
SDCBP-210ENST00000522843 A0A1B0GTL3 188 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 KCNJ18B7U540 433 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 CYB561D2O14569 222 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 RRP8O43159 456 aaKnown RBP7.05□□□□□ -1.28
SDCBP-210ENST00000522843 SLC28A2O43868 658 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 BRINP1O60477 761 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 NEMFO60524 1076 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 ZNF217O75362 1048 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 TULP3O75386 442 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 CTDNEP1O95476 244 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 CER1O95813 267 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 OLFM2O95897 454 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 CLTAP09496 248 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 GNSP15586 552 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 GUCY2CP25092 1073 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 ERCC5P28715 1186 aaPredicted RBP7.05□□□□□ -1.28
SDCBP-210ENST00000522843 NTSR1P30989 418 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 IL12RB1P42701 662 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 CSRP3P50461 194 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 MVKQ03426 396 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 CCDC173Q0VFZ6 552 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 TARDBPQ13148 414 aaKnown RBP eCLIP7.05□□□□□ -1.28
SDCBP-210ENST00000522843 STK3Q13188 491 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 NUMA1Q14980 2115 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 KIF19Q2TAC6 998 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 KCNT1Q5JUK3 1230 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 WDR45BQ5MNZ6 344 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 LY6G5CQ5SRR4 150 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 SYCP2LQ5T4T6 812 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 PAQR3Q6TCH7 311 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 USP49Q70CQ1 688 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 NAT16Q8N8M0 369 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 TMEM161BQ8NDZ6 487 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 LEO1Q8WVC0 666 aaPredicted RBP7.05□□□□□ -1.28
SDCBP-210ENST00000522843 TOE1Q96GM8 510 aaKnown RBP7.05□□□□□ -1.28
SDCBP-210ENST00000522843 MRGPRX1Q96LB2 322 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 GABRG3Q99928 467 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 PYM1Q9BRP8 204 aaKnown RBP7.05□□□□□ -1.28
SDCBP-210ENST00000522843 KRTAP9-8Q9BYQ0 159 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 TRIM4Q9C037 500 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 CCSER1Q9C0I3 900 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 CPNE5Q9HCH3 593 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 KMT5AQ9NQR1 393 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 WSB2Q9NYS7 404 aaPredicted RBP7.05□□□□□ -1.28
SDCBP-210ENST00000522843 PRR13Q9NZ81 148 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 UXTQ9UBK9 157 aaPredicted RBP7.05□□□□□ -1.28
SDCBP-210ENST00000522843 NFE2L3Q9Y4A8 694 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 CPQQ9Y646 472 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 TCHHQ07283 1943 aa7.05□□□□□ -1.28
SDCBP-210ENST00000522843 SH3D21A4FU49 640 aa7.04□□□□□ -1.28
SDCBP-210ENST00000522843 TBC1D3BA6NDS4 549 aa7.04□□□□□ -1.28
SDCBP-210ENST00000522843 WASH3PC4AMC7 463 aa7.04□□□□□ -1.28
SDCBP-210ENST00000522843 PRRT4C9JH25 899 aa7.04□□□□□ -1.28
SDCBP-210ENST00000522843 CPLX1O14810 134 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms