RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 C1QBPQ07021 282 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 KCNA10Q16322 511 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 DPY19L2Q6NUT2 758 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 TMC7Q7Z402 723 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 NLGN1Q8N2Q7 840 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 ZFAND2BQ8WV99 257 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 ACAT2Q9BWD1 397 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 SLC6A15Q9H2J7 730 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 EXD2Q9NVH0 621 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 ZNF232Q9UNY5 417 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 MEMO1Q9Y316 297 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 SNX8Q9Y5X2 465 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 A0A096LPK6 155 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 RPN2P04844 631 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 VDRP11473 427 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 PRKAR2AP13861 404 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 DRD4P21917 467 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 SUZ12Q15022 739 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 HERC3Q15034 1050 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 SWSAP1Q6NVH7 229 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 ZNF549Q6P9A3 640 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 PIWIL4Q7Z3Z4 852 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 UBE2E3Q969T4 207 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 NEDD4LQ96PU5 975 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 ZNF408Q9H9D4 720 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 TAS2R13Q9NYV9 303 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 FBXO9Q9UK97 447 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 ANGPT4Q9Y264 503 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 FGRP09769 529 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 CPB1P15086 417 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 RPA1P27694 616 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 DDX39BQ13838 428 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 CSHL1Q14406 222 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 CYB5R4Q7L1T6 521 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 NACC2Q96BF6 587 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 PHF12Q96QT6 1004 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 PAK6Q9NQU5 681 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 MAN1C1Q9NR34 630 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 DNAJB4Q9UDY4 337 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 ITGA11Q9UKX5 1188 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 DHRS7Q9Y394 339 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 FADS3Q9Y5Q0 445 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 ZNF518AQ6AHZ1 1483 aa11.4□□□□□ -0.58
LIMCH1-217ENST00000512946 KIF28PB7ZC32 967 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 DDX3XO00571 662 aaKnown RBP eCLIP11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 IFNA6P05013 189 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 F8A1P23610 371 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 UGT2B15P54855 530 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 AP1S1P61966 158 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 PAGE2BQ5JRK9 111 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 THAP5Q7Z6K1 395 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 ARMC8Q8IUR7 673 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 HS6ST3Q8IZP7 471 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 PPP3R2Q96LZ3 170 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 RTKNQ9BST9 563 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 PRMT7Q9NVM4 692 aaPredicted RBP11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 VANGL2Q9ULK5 521 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 POLR1DQ9Y2S0 133 aa11.4□□□□□ -0.59
LIMCH1-217ENST00000512946 MYMKA6NI61 221 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 IFRD1O00458 451 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 AP3D1O14617 1153 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 MED24O75448 989 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 GRIA3P42263 894 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 GRSF1Q12849 480 aaKnown RBP eCLIP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 TKFCQ3LXA3 575 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF662Q6ZS27 426 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 KCNK18Q7Z418 384 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 SPIRE2Q8WWL2 714 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 REEP2Q9BRK0 252 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 MUC3BQ9H195 1237 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 TAS2R1Q9NYW7 299 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 PALLDQ8WX93 1383 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 KCNK1O00180 336 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 TGDSO95455 350 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 SMAD1Q15797 465 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 TMPRSS11AQ6ZMR5 421 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 R3HCC1LQ7Z5L2 792 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 CCDC28AQ8IWP9 274 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 LZTR1Q8N653 840 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 METTL6Q8TCB7 284 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 TDRD1Q9BXT4 1180 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 DHX33Q9H6R0 707 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 PCDH12Q9NPG4 1184 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 MAN2B2Q9Y2E5 1009 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 NEDD4P46934 1319 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 USP42Q9H9J4 1324 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L5A8MUK1 530 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 HARS2P49590 506 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 MAZP56270 477 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 CUL2Q13617 745 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 CBWD2Q8IUF1 395 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 ZFP28Q8NHY6 868 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 PDGFCQ9NRA1 345 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 TAS2R7Q9NYW3 318 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 IFT80Q9P2H3 777 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 H7C1W4 665 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 HDAC3O15379 428 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 PSIP1O75475 530 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 TDP2O95551 362 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 HALP42357 657 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms