RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SDHAF4Q5VUM1 108 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 TRIM42Q8IWZ5 723 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 SMARCD1Q96GM5 515 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 APBA2Q99767 749 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 KATNAL1Q9BW62 490 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 DCDC2Q9UHG0 476 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 LOC100653049A0A140TA62 436 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 GLRA3O75311 464 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 KRT34O76011 436 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 AVPR1AP37288 418 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 WASHC2DQ5SRD0 308 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 TAF2Q6P1X5 1199 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 EFCAB3Q8N7B9 438 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 NTAN1Q96AB6 310 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 SLC9A7Q96T83 725 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 SENP6Q9GZR1 1112 aaPredicted RBP19.49■□□□□ 0.71
VIM-203ENST00000469543 LRRC40Q9H9A6 602 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 SLC38A7Q9NVC3 462 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.49■□□□□ 0.71
VIM-203ENST00000469543 ZMPSTE24O75844 475 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 CNTFP26441 200 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 ABL2P42684 1182 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 GLRBP48167 497 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 CXCR3P49682 368 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 SLC25A3Q00325 362 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 C17orf99Q6UX52 265 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 CD300LGQ6UXG3 332 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 DQX1Q8TE96 717 aaKnown RBP19.49■□□□□ 0.71
VIM-203ENST00000469543 RBBP8Q99708 897 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 TRPV2Q9Y5S1 764 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 WASF2Q9Y6W5 498 aa19.49■□□□□ 0.71
VIM-203ENST00000469543 UNCXA6NJT0 531 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 FBXO21O94952 628 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 SCAPQ12770 1279 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 ZNF460Q14592 562 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 EML3Q32P44 896 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 ARL13BQ3SXY8 428 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 MYCBPQ99417 103 aaPredicted RBP19.48■□□□□ 0.71
VIM-203ENST00000469543 DNAI2Q9GZS0 605 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 CDH9Q9ULB4 789 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 A0A096LPK6 155 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 PHGDHO43175 533 aaKnown RBP19.48■□□□□ 0.71
VIM-203ENST00000469543 MOCS2O96007 188 aaPredicted RBP19.48■□□□□ 0.71
VIM-203ENST00000469543 RALBP11234 206 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 POU6F1Q14863 301 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 ENDOVQ8N8Q3 282 aaKnown RBP19.48■□□□□ 0.71
VIM-203ENST00000469543 NAF1Q96HR8 494 aaKnown RBP19.48■□□□□ 0.71
VIM-203ENST00000469543 TEKT5Q96M29 485 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 ZIC5Q96T25 663 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 CASS4Q9NQ75 786 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 MPP6Q9NZW5 540 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 SLC39A10Q9ULF5 831 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 SCN4AP35499 1836 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 B4GALT3O60512 393 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 CPA3P15088 417 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 RGS2P41220 211 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 FKBP1BP68106 108 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 MXRA7P84157 204 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 RALGPS1Q5JS13 557 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 KCNMB4Q86W47 210 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 WDR75Q8IWA0 830 aaKnown RBP19.48■□□□□ 0.71
VIM-203ENST00000469543 ZNF781Q8N8C0 355 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 APBB2Q92870 758 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 CPNE1Q99829 537 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 FTHL17Q9BXU8 183 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 GBA3Q9H227 469 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 DCLRE1BQ9H816 532 aa19.48■□□□□ 0.71
VIM-203ENST00000469543 C2P06681 752 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 AKR1A1P14550 325 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 IDH3AP50213 366 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 GALNT2Q10471 571 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 CTBP1Q13363 440 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 SPANXN3Q5MJ09 141 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 DENND6AQ8IWF6 608 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 TMEM86AQ8N2M4 240 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 GABRQQ9UN88 632 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 SF3B1O75533 1304 aaKnown RBP eCLIP19.47■□□□□ 0.714e-7■■■■■ 40.1
VIM-203ENST00000469543 C9IYK1 514 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 GJA9P57773 515 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 CACNB2Q08289 660 aaPredicted RBP19.47■□□□□ 0.71
VIM-203ENST00000469543 NOMO2Q5JPE7 1267 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 CCNJLQ8IV13 435 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 IPMKQ8NFU5 416 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 HDAC11Q96DB2 347 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 NAT9Q9BTE0 207 aa19.47■□□□□ 0.71
VIM-203ENST00000469543 TK2O00142 265 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 SIN3BO75182 1162 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 SERPINA6P08185 405 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 PDHA1P08559 390 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 GABRB3P28472 473 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 GRM3Q14832 879 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 FAM219BQ5XKK7 198 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 PHTF2Q8N3S3 785 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 MAPK15Q8TD08 544 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 GPR152Q8TDT2 470 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 ACMSDQ8TDX5 336 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 TRIB2Q92519 343 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 DPF3Q92784 378 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 EPAS1Q99814 870 aa19.46■□□□□ 0.71
VIM-203ENST00000469543 ADAM2Q99965 735 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms