RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TMX2-CTNND1H3BSU7 103 aa8.83□□□□□ -1
USP40-203ENST00000427112 DYNC1LI2O43237 492 aaPredicted RBP8.83□□□□□ -1
USP40-203ENST00000427112 RECQL4O94761 1208 aa8.83□□□□□ -1
USP40-203ENST00000427112 NFKB1P19838 968 aa8.83□□□□□ -1
USP40-203ENST00000427112 ABCE1P61221 599 aaKnown RBP8.83□□□□□ -1
USP40-203ENST00000427112 RBP5P82980 135 aa8.83□□□□□ -1
USP40-203ENST00000427112 CSHL1Q14406 222 aa8.83□□□□□ -1
USP40-203ENST00000427112 PRPSAP1Q14558 356 aa8.83□□□□□ -1
USP40-203ENST00000427112 GRM3Q14832 879 aa8.83□□□□□ -1
USP40-203ENST00000427112 TLR1Q15399 786 aa8.83□□□□□ -1
USP40-203ENST00000427112 ARL13AQ5H913 290 aaPredicted RBP8.83□□□□□ -1
USP40-203ENST00000427112 CLEC6AQ6EIG7 209 aa8.83□□□□□ -1
USP40-203ENST00000427112 ST13P4Q8IZP2 240 aaPredicted RBP8.83□□□□□ -1
USP40-203ENST00000427112 SORT1Q99523 831 aa8.83□□□□□ -1
USP40-203ENST00000427112 ZNF518BQ9C0D4 1074 aa8.83□□□□□ -1
USP40-203ENST00000427112 FBRSL1Q9HCM7 1045 aaKnown RBP8.83□□□□□ -1
USP40-203ENST00000427112 TCF7L2Q9NQB0 619 aa8.83□□□□□ -1
USP40-203ENST00000427112 COPG2Q9UBF2 871 aa8.83□□□□□ -1
USP40-203ENST00000427112 EGFL7Q9UHF1 273 aa8.83□□□□□ -1
USP40-203ENST00000427112 EVLQ9UI08 416 aaPredicted RBP8.83□□□□□ -1
USP40-203ENST00000427112 ARHGAP26Q9UNA1 814 aa8.83□□□□□ -1
USP40-203ENST00000427112 PCDHA11Q9Y5I1 949 aa8.83□□□□□ -1
USP40-203ENST00000427112 C15orf38-AP3S2A0A0A6YYH1 394 aa8.83□□□□□ -1
USP40-203ENST00000427112 KCNU1A8MYU2 1149 aa8.83□□□□□ -1
USP40-203ENST00000427112 EEF2KO00418 725 aaKnown RBP8.83□□□□□ -1
USP40-203ENST00000427112 NRP1O14786 923 aa8.83□□□□□ -1
USP40-203ENST00000427112 STAMBPO95630 424 aa8.83□□□□□ -1
USP40-203ENST00000427112 CKMT2P17540 419 aa8.83□□□□□ -1
USP40-203ENST00000427112 NR4A1P22736 598 aa8.83□□□□□ -1
USP40-203ENST00000427112 KLF10Q13118 480 aa8.83□□□□□ -1
USP40-203ENST00000427112 BOLA3Q53S33 107 aa8.83□□□□□ -1
USP40-203ENST00000427112 FAM47CQ5HY64 1035 aa8.83□□□□□ -1
USP40-203ENST00000427112 ARPINQ7Z6K5 226 aa8.83□□□□□ -1
USP40-203ENST00000427112 CDKL3Q8IVW4 592 aaPredicted RBP8.83□□□□□ -1
USP40-203ENST00000427112 NLGN2Q8NFZ4 835 aa8.83□□□□□ -1
USP40-203ENST00000427112 RDM1Q8NG50 284 aa8.83□□□□□ -1
USP40-203ENST00000427112 ESAMQ96AP7 390 aa8.83□□□□□ -1
USP40-203ENST00000427112 CAMKK2Q96RR4 588 aa8.83□□□□□ -1
USP40-203ENST00000427112 SIRPGQ9P1W8 387 aa8.83□□□□□ -1
USP40-203ENST00000427112 ZNF212Q9UDV6 495 aa8.83□□□□□ -1
USP40-203ENST00000427112 ZDHHC2Q9UIJ5 367 aa8.83□□□□□ -1
USP40-203ENST00000427112 DSEQ9UL01 958 aa8.83□□□□□ -1
USP40-203ENST00000427112 OR51F1A6NGY5 319 aa8.83□□□□□ -1
USP40-203ENST00000427112 MSI1O43347 362 aaKnown RBP8.83□□□□□ -1
USP40-203ENST00000427112 SERPINA6P08185 405 aa8.83□□□□□ -1
USP40-203ENST00000427112 HMBSP08397 361 aa8.83□□□□□ -1
USP40-203ENST00000427112 CPOXP36551 454 aa8.83□□□□□ -1
USP40-203ENST00000427112 ALDH1A3P47895 512 aa8.83□□□□□ -1
USP40-203ENST00000427112 GRIA4P48058 902 aa8.83□□□□□ -1
USP40-203ENST00000427112 GALK1P51570 392 aa8.83□□□□□ -1
USP40-203ENST00000427112 PPP1R8Q12972 351 aaKnown RBP8.83□□□□□ -1
USP40-203ENST00000427112 TRMT5Q32P41 509 aaKnown RBP8.83□□□□□ -1
USP40-203ENST00000427112 LSM12Q3MHD2 195 aaKnown RBP8.83□□□□□ -1
USP40-203ENST00000427112 CELF3Q5SZQ8 465 aaKnown RBP8.83□□□□□ -1
USP40-203ENST00000427112 WSCD1Q658N2 575 aa8.83□□□□□ -1
USP40-203ENST00000427112 TFAP2DQ7Z6R9 452 aa8.83□□□□□ -1
USP40-203ENST00000427112 SIX6OS1Q8N1H7 587 aa8.83□□□□□ -1
USP40-203ENST00000427112 RNF139Q8WU17 664 aa8.83□□□□□ -1
USP40-203ENST00000427112 NUDT8Q8WV74 236 aa8.83□□□□□ -1
USP40-203ENST00000427112 DNAJB3Q8WWF6 145 aa8.83□□□□□ -1
USP40-203ENST00000427112 GATA6Q92908 595 aa8.83□□□□□ -1
USP40-203ENST00000427112 NIFKQ9BYG3 293 aaKnown RBP8.83□□□□□ -1
USP40-203ENST00000427112 TMEM134Q9H6X4 195 aa8.83□□□□□ -1
USP40-203ENST00000427112 GBA2Q9HCG7 927 aaPredicted RBP8.83□□□□□ -1
USP40-203ENST00000427112 PIGVQ9NUD9 493 aa8.83□□□□□ -1
USP40-203ENST00000427112 TLK1Q9UKI8 766 aa8.83□□□□□ -1
USP40-203ENST00000427112 CNTN6Q9UQ52 1028 aa8.83□□□□□ -1
USP40-203ENST00000427112 A0A0C4DFX4 3053 aa8.83□□□□□ -1
USP40-203ENST00000427112 CASTOR2A6NHX0 329 aa8.82□□□□□ -1
USP40-203ENST00000427112 NCF1BA6NI72 391 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 NCF1CA8MVU1 366 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 C1QAP02745 245 aa8.82□□□□□ -1
USP40-203ENST00000427112 LGALS2P05162 132 aa8.82□□□□□ -1
USP40-203ENST00000427112 TFPTP0C1Z6 253 aa8.82□□□□□ -1
USP40-203ENST00000427112 NCF1P14598 390 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 DESP17661 470 aa8.82□□□□□ -1
USP40-203ENST00000427112 ERCC2P18074 760 aa8.82□□□□□ -1
USP40-203ENST00000427112 BEX3Q00994 111 aa8.82□□□□□ -1
USP40-203ENST00000427112 SOX4Q06945 474 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 SLC5A9Q2M3M2 681 aa8.82□□□□□ -1
USP40-203ENST00000427112 KCTD21Q4G0X4 260 aa8.82□□□□□ -1
USP40-203ENST00000427112 LIN52Q52LA3 116 aa8.82□□□□□ -1
USP40-203ENST00000427112 MTX3Q5HYI7 312 aa8.82□□□□□ -1
USP40-203ENST00000427112 LCA5Q86VQ0 697 aa8.82□□□□□ -1
USP40-203ENST00000427112 CHSY1Q86X52 802 aa8.82□□□□□ -1
USP40-203ENST00000427112 NUP93Q8N1F7 819 aa8.82□□□□□ -1
USP40-203ENST00000427112 NXNL1Q96CM4 212 aa8.82□□□□□ -1
USP40-203ENST00000427112 CERS2Q96G23 380 aa8.82□□□□□ -1
USP40-203ENST00000427112 CIB1Q99828 191 aa8.82□□□□□ -1
USP40-203ENST00000427112 MTMR10Q9NXD2 777 aa8.82□□□□□ -1
USP40-203ENST00000427112 VANGL2Q9ULK5 521 aa8.82□□□□□ -1
USP40-203ENST00000427112 FAF1Q9UNN5 650 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 MICAL3Q7RTP6 2002 aa8.82□□□□□ -1
USP40-203ENST00000427112 LRRC14BA6NHZ5 514 aa8.82□□□□□ -1
USP40-203ENST00000427112 TRAFD1O14545 582 aaPredicted RBP8.82□□□□□ -1
USP40-203ENST00000427112 SERPINE1P05121 402 aa8.82□□□□□ -1
USP40-203ENST00000427112 CHRM3P20309 590 aa8.82□□□□□ -1
USP40-203ENST00000427112 CRHR1P34998 444 aa8.82□□□□□ -1
USP40-203ENST00000427112 CSE1LP55060 971 aaKnown RBP8.82□□□□□ -1
USP40-203ENST00000427112 USP46P62068 366 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms