RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RAP2CQ9Y3L5 183 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 IRAK3Q9Y616 596 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 A0A096LPK6 155 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 C2CD2LO14523 706 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SNX3O60493 162 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 RAMP2O60895 175 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 UGT2B11O75310 529 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PMPCBO75439 489 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CABYRO75952 493 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CCNDBP1O95273 360 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CTDNEP1O95476 244 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 NTSR2O95665 410 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF682O95780 498 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TCN1P20061 433 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ATP6V1C1P21283 382 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 BGNP21810 368 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TLX1P31314 330 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 AP3S2P59780 193 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 YWHAZP63104 245 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 UBE3AQ05086 875 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 QPRTQ15274 297 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 LSM12Q3MHD2 195 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SPATA19Q7Z5L4 167 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CACTIN-AS1Q8N1I8 211 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 NBPF15Q8N660 670 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF248Q8NDW4 579 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 OR7A2PQ8NGA2 310 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 RXFP2Q8WXD0 754 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 OTUD5Q96G74 571 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PPP1R16AQ96I34 528 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 RNF145Q96MT1 663 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PPP1R16BQ96T49 567 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 MRPL57Q9BQC6 102 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PAIP1Q9H074 479 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PNPLA8Q9NP80 782 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SPAG4Q9NPE6 437 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 KCTD5Q9NXV2 234 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 DKK3Q9UBP4 350 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 HACL1Q9UJ83 578 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 AK5Q9Y6K8 562 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 DIP2AQ14689 1571 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CYB561D2O14569 222 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CHST10O43529 356 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ZBTB14O43829 449 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 FGF19O95750 216 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PRKAR1AP10644 381 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 RAG1P15918 1043 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TPP2P29144 1249 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TCF7P36402 384 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SLC6A3Q01959 620 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TAF1CQ15572 869 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CXXC5Q7LFL8 322 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ADAMTSL2Q86TH1 951 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TXNRD3Q86VQ6 643 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CLVS1Q8IUQ0 354 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PSTKQ8IV42 348 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 MAP4K3Q8IVH8 894 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 LRRC17Q8N6Y2 441 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TCF12Q99081 682 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF670Q9BS34 389 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 MLPHQ9BV36 600 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 GNPTGQ9UJJ9 305 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 DERAQ9Y315 318 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 HS6ST1O60243 411 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SKAP2O75563 359 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 GCATO75600 419 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 URODP06132 367 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SNRPB2P08579 225 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ANXA5P08758 320 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SLC2A4P14672 509 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 VAV1P15498 845 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CAPGP40121 348 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SLC26A3P40879 764 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 HALP42357 657 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TTPAP49638 278 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 INTS6LQ5JSJ4 861 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 AFTPHQ6ULP2 937 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 MACC1Q6ZN28 852 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 EIF3MQ7L2H7 374 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF571Q7Z3V5 609 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 KRT77Q7Z794 578 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 C12orf56Q8IXR9 622 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF276Q8N554 614 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 C10orf53Q8N6V4 93 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 S100A13Q99584 98 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 EHD1Q9H4M9 534 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 MAGEE1Q9HCI5 957 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CD248Q9HCU0 757 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 DNAAF2Q9NVR5 837 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 GMIPQ9P107 970 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ARHGAP20Q9P2F6 1191 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 OPTCQ9UBM4 332 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 FETUBQ9UGM5 382 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF510Q9Y2H8 683 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PCDHA11Q9Y5I1 949 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CAPN6Q9Y6Q1 641 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ROBO3Q96MS0 1386 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 A0A0A0MRY4 1105 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PIPSLA2A3N6 862 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms