RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 TDP1Q9NUW8 608 aa27.45■■□□□ 1.99
MSX1-201ENST00000382723 IPO11Q9UI26 975 aaKnown RBP27.45■■□□□ 1.99
MSX1-201ENST00000382723 SHOC2Q9UQ13 582 aa27.45■■□□□ 1.99
MSX1-201ENST00000382723 ZNF510Q9Y2H8 683 aa27.45■■□□□ 1.99
MSX1-201ENST00000382723 CLDN11O75508 207 aa27.45■■□□□ 1.98
MSX1-201ENST00000382723 ZNF189O75820 626 aaPredicted RBP27.45■■□□□ 1.98
MSX1-201ENST00000382723 PRAMEF12O95522 483 aa27.45■■□□□ 1.98
MSX1-201ENST00000382723 JCHAINP01591 159 aa27.45■■□□□ 1.98
MSX1-201ENST00000382723 HSPA9P38646 679 aaKnown RBP27.45■■□□□ 1.98
MSX1-201ENST00000382723 GAD2Q05329 585 aa27.45■■□□□ 1.98
MSX1-201ENST00000382723 BHMTQ93088 406 aa27.45■■□□□ 1.98
MSX1-201ENST00000382723 AGAP3Q96P47 875 aa27.45■■□□□ 1.98
MSX1-201ENST00000382723 TBL1XO60907 577 aa27.44■■□□□ 1.98
MSX1-201ENST00000382723 ZNF33AQ06730 810 aa27.44■■□□□ 1.98
MSX1-201ENST00000382723 ZCCHC9Q8N567 271 aaKnown RBP27.44■■□□□ 1.98
MSX1-201ENST00000382723 RIN3Q8TB24 985 aa27.44■■□□□ 1.98
MSX1-201ENST00000382723 TMA16Q96EY4 203 aaKnown RBP27.44■■□□□ 1.98
MSX1-201ENST00000382723 CDH22Q9UJ99 828 aa27.44■■□□□ 1.98
MSX1-201ENST00000382723 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP27.43■■□□□ 1.98
MSX1-201ENST00000382723 A0A1B0GVM2 712 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 TCAF2A6NFQ2 919 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 TMEM63AO94886 807 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 CCNB1P14635 433 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 ACVRL1P37023 503 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 ZNF177Q13360 481 aaPredicted RBP27.43■■□□□ 1.98
MSX1-201ENST00000382723 PARP15Q460N3 678 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 HOOK3Q86VS8 718 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 LRRC49Q8IUZ0 686 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 NOTCH4Q99466 2003 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 SOBPA7XYQ1 873 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 MATN3O15232 486 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 ZBTB24O43167 697 aaPredicted RBP27.43■■□□□ 1.98
MSX1-201ENST00000382723 PPFIA2O75334 1257 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 KCNJ11Q14654 390 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 TEX44Q53QW1 395 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 TTC39BQ5VTQ0 682 aaPredicted RBP27.43■■□□□ 1.98
MSX1-201ENST00000382723 TIGD7Q6NT04 549 aaPredicted RBP27.43■■□□□ 1.98
MSX1-201ENST00000382723 CHST9Q7L1S5 443 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 FAM217AQ8IXS0 508 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 OR52K2Q8NGK3 314 aa27.43■■□□□ 1.98
MSX1-201ENST00000382723 A0A0D9SEW6 157 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 TYW5A2RUC4 315 aaKnown RBP27.42■■□□□ 1.98
MSX1-201ENST00000382723 J3KR12 359 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 APRTP07741 180 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 YBEYP58557 167 aaPredicted RBP27.42■■□□□ 1.98
MSX1-201ENST00000382723 ARID3BQ8IVW6 561 aaPredicted RBP27.42■■□□□ 1.98
MSX1-201ENST00000382723 CARNMT1Q8N4J0 409 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 MREGQ8N565 214 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 EFHBQ8N7U6 833 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 TDRD5Q8NAT2 981 aaKnown RBP27.42■■□□□ 1.98
MSX1-201ENST00000382723 HJURPQ8NCD3 748 aaPredicted RBP27.42■■□□□ 1.98
MSX1-201ENST00000382723 UBLCP1Q8WVY7 318 aaPredicted RBP27.42■■□□□ 1.98
MSX1-201ENST00000382723 TXLNGYQ9BZA5 131 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 RETREG1Q9H6L5 497 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 SP110Q9HB58 689 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 NUP205Q92621 2012 aa27.42■■□□□ 1.98
MSX1-201ENST00000382723 E2F8A0AVK6 867 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 E7EVH7 732 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 MAP2K7O14733 419 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 CHADO15335 359 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 PSMB4P28070 264 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 C6orf118Q5T5N4 469 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 TPGS1Q6ZTW0 290 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 ZSCAN18Q8TBC5 510 aaPredicted RBP27.41■■□□□ 1.98
MSX1-201ENST00000382723 HPCAL4Q9UM19 191 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 DOCK4Q8N1I0 1966 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 GFRA2O00451 464 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 PAPLNO95428 1278 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 RHOCP08134 193 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 HSD17B3P37058 310 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 PMS2P54278 862 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 GNA12Q03113 381 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 SERINC3Q13530 473 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 SLMAPQ14BN4 828 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP27.41■■□□□ 1.98
MSX1-201ENST00000382723 OR7D4Q8NG98 312 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 DDI1Q8WTU0 396 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 ARHGEF2Q92974 986 aaKnown RBP27.41■■□□□ 1.98
MSX1-201ENST00000382723 RBM15Q96T37 977 aaKnown RBP eCLIP27.41■■□□□ 1.98
MSX1-201ENST00000382723 VAT1Q99536 393 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 TSPYL1Q9H0U9 437 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 ZMYM5Q9UJ78 669 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 TRHDEQ9UKU6 1024 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 TTLL3Q9Y4R7 772 aa27.41■■□□□ 1.98
MSX1-201ENST00000382723 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP27.4■■□□□ 1.98
MSX1-201ENST00000382723 H0Y626 953 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 ATP8B1O43520 1251 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 FDFT1P37268 417 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 LMAN1P49257 510 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 IFI35P80217 286 aaPredicted RBP27.4■■□□□ 1.98
MSX1-201ENST00000382723 MTM1Q13496 603 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 PARP6Q2NL67 630 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 LEKR1Q6ZMV7 388 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 PABPC5Q96DU9 382 aaKnown RBP27.4■■□□□ 1.98
MSX1-201ENST00000382723 TEKT5Q96M29 485 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 SPON2Q9BUD6 331 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 RSPH14Q9UHP6 348 aa27.4■■□□□ 1.98
MSX1-201ENST00000382723 FSHRP23945 695 aa27.39■■□□□ 1.98
MSX1-201ENST00000382723 CD68P34810 354 aaPredicted RBP27.39■■□□□ 1.98
MSX1-201ENST00000382723 RGS19P49795 217 aa27.39■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms