RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 THOP1P52888 689 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 RAB25P57735 213 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CCZ1BP86790 482 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CCZ1P86791 482 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SRSF11Q05519 484 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CDH17Q12864 832 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 TCEA2Q15560 299 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 IL27RAQ6UWB1 636 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ABRAXAS1Q6UWZ7 409 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 Q96MT0 163 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SENP6Q9GZR1 1112 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 OPTCQ9UBM4 332 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 COG5Q9UP83 839 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 TNFSF13BQ9Y275 285 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 TAF6LQ9Y6J9 622 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 MCIDASD6RGH6 385 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 PRMT3O60678 531 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 OR5F1O95221 314 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 PGK1P00558 417 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 APOC1P02654 83 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CYP1A1P04798 512 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 LTKP29376 864 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 LHX1P48742 406 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 MARSP56192 900 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 BNC1Q01954 994 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 TRAP1Q12931 704 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ITGB3BPQ13352 177 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 RGS21Q2M5E4 152 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SAMD4BQ5PRF9 694 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 FAAH2Q6GMR7 532 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SPOCD1Q6ZMY3 1216 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 POC5Q8NA72 575 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ELMO1Q92556 727 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CCDC115Q96NT0 180 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 PHF20Q9BVI0 1012 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 GSDMCQ9BYG8 508 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 MFSD1Q9H3U5 465 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 RXFP1Q9HBX9 757 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CCDC167Q9P0B6 97 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 COL15A1P39059 1388 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ATXN2Q99700 1313 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 RAMP2O60895 175 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 UBOX5O94941 541 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 KCNH1O95259 989 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 IGSF6O95976 241 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 PLEKP08567 350 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 TPH1P17752 444 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 PRKAA2P54646 552 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 GMFBP60983 142 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SETMARQ53H47 684 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 WASHC2DQ5SRD0 308 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 GLT6D1Q7Z4J2 308 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 KCNMB4Q86W47 210 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 OFCC1Q8IZS5 231 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SAMD3Q8N6K7 520 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 FBXO30Q8TB52 745 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 DPF3Q92784 378 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CELF6Q96J87 481 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CNPPD1Q9BV87 410 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ABCB10Q9NRK6 738 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ZNRF3Q9ULT6 936 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 FAM50BQ9Y247 325 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 AP3M1Q9Y2T2 418 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 LMTK2Q8IWU2 1503 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ROBO2Q9HCK4 1378 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 RECQL5O94762 991 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ZNF432O94892 652 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ATP6V1G2O95670 118 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 CEBPGP53567 150 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ILF2Q12905 390 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SUZ12Q15022 739 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 PTPAQ15257 358 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 FNDC3BQ53EP0 1204 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 RBM43Q6ZSC3 357 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 ZSWIM2Q8NEG5 633 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 BPIFB6Q8NFQ5 453 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 TRNT1Q96Q11 434 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 HGH1Q9BTY7 390 aa10.55□□□□□ -0.72
CLIP1-201ENST00000302528 SUCOQ9UBS9 1254 aaKnown RBP10.55□□□□□ -0.72
CLIP1-201ENST00000302528 WRBO00258 174 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 OR10H2O60403 315 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 SEMA3DO95025 777 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 RTN3O95197 1032 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-201ENST00000302528 SEC24AO95486 1093 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 BMP7P18075 431 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 HUNKP57058 714 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 CRY1Q16526 586 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 EIF2S3LQ2VIR3 472 aaKnown RBP10.54□□□□□ -0.72
CLIP1-201ENST00000302528 GPAT3Q53EU6 434 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 CROCCP3Q8IVE0 287 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 ZFP28Q8NHY6 868 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 CSGALNACT1Q8TDX6 532 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 RFT1Q96AA3 541 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 TMBIM4Q9HC24 238 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 TMEM216Q9P0N5 145 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 SMCO3A2RU48 225 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 KMOO15229 486 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 THP07101 528 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 CYP2F1P24903 491 aa10.54□□□□□ -0.72
CLIP1-201ENST00000302528 TKTL1P51854 596 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms