RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 NANOGP8Q6NSW7 305 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 HMBOX1Q6NT76 420 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 SCYL2Q6P3W7 929 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 XKR5Q6UX68 686 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 LYSMD3Q7Z3D4 306 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 DCLK2Q8N568 766 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 HM13Q8TCT9 377 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 NEURL2Q9BR09 285 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 ANKRD60Q9BZ19 345 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 VPS45Q9NRW7 570 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 AP4S1Q9Y587 144 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 WDR46O15213 610 aaKnown RBP11.1□□□□□ -0.63
ZNF558-201ENST00000301475 C8BP07358 591 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 DPEP1P16444 411 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 CKMT2P17540 419 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 GTF2A2P52657 109 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 NSUN2Q08J23 767 aaKnown RBP eCLIP11.1□□□□□ -0.63
ZNF558-201ENST00000301475 TRPC3Q13507 836 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 ART3Q13508 389 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 PTK2BQ14289 1009 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 CCDC153Q494R4 210 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 TREML2Q5T2D2 321 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 BSPRYQ5W0U4 402 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 ZBTB46Q86UZ6 589 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 TBC1D15Q8TC07 691 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 FAM110BQ8TC76 370 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 TRPC4APQ8TEL6 797 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 SNRNP25Q9BV90 132 aaKnown RBP11.1□□□□□ -0.63
ZNF558-201ENST00000301475 PDZD7Q9H5P4 517 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 CAB39LQ9H9S4 337 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 ZBTB26Q9HCK0 441 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 C20orf96Q9NUD7 363 aaPredicted RBP11.1□□□□□ -0.63
ZNF558-201ENST00000301475 SNX13Q9Y5W8 968 aa11.1□□□□□ -0.63
ZNF558-201ENST00000301475 A0A1W2PPW3 197 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TMEM247A6NEH6 219 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TRIM64CA6NLI5 447 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 M0QYV0 167 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 HDAC3O15379 428 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 GRID2O43424 1007 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 ZBTB11O95625 1053 aaPredicted RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 INHBBP09529 407 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 OCM2P0CE71 109 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 OCMP0CE72 109 aaPredicted RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 HMOX2P30519 316 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 MAGEA12P43365 314 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 NAMPTP43490 491 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 BCAP31P51572 246 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 PRAMEP78395 509 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TMEM53Q6P2H8 277 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 CENPSQ8N2Z9 138 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 CPSF7Q8N684 471 aaKnown RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 ASB9Q96DX5 294 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 PLEKHA8Q96JA3 519 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 MAGEB5Q9BZ81 275 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TRPV6Q9H1D0 765 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 PORCNQ9H237 461 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TSPYL2Q9H2G4 693 aaPredicted RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 RMI1Q9H9A7 625 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 NGRNQ9NPE2 291 aaKnown RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 COL2A1P02458 1487 aaPredicted RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 CLRN2A0PK11 232 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 HTR3EA5X5Y0 456 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 FAM155AB1AL88 458 aaPredicted RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TMEM114B3SHH9 223 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 H3BMQ9 156 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TRIM38O00635 465 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TADA2AO75478 443 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 RGS20O76081 388 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 PROZP22891 400 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 ATP1A4Q13733 1029 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 RFTN1Q14699 578 aaPredicted RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 ZBED5Q49AG3 693 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 NHSL2Q5HYW2 709 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 ARHGEF16Q5VV41 709 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 SEL1L3Q68CR1 1132 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 CDKL3Q8IVW4 592 aaPredicted RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 HACE1Q8IYU2 909 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TANKQ92844 425 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 BORCS5Q969J3 196 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 COG8Q96MW5 612 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 DHX35Q9H5Z1 703 aaKnown RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 RPF2Q9H7B2 306 aaKnown RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 SYBUQ9NX95 663 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 ADA2Q9NZK5 511 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 MFHAS1Q9Y4C4 1052 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 RBM47A0AV96 593 aaKnown RBP11.09□□□□□ -0.63
ZNF558-201ENST00000301475 SOCS2O14508 198 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 MED7O43513 233 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 TRIM13O60858 407 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 HOXC6P09630 235 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 ZNF24P17028 368 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 GP5P40197 560 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 GPD2P43304 727 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 CD151P48509 253 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 ACTR2P61160 394 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 CD300CQ08708 224 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 RALGDSQ12967 914 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 SPIDRQ14159 915 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 PDK2Q15119 407 aa11.09□□□□□ -0.63
ZNF558-201ENST00000301475 DUOXA2Q1HG44 320 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms