RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PMPCAQ10713 525 aa7□□□□□ -1.29
SS18-214ENST00000580003 PDCLQ13371 301 aa7□□□□□ -1.29
SS18-214ENST00000580003 ALKBH1Q13686 389 aaKnown RBP7□□□□□ -1.29
SS18-214ENST00000580003 PIK3CD-AS1Q5SR53 167 aa7□□□□□ -1.29
SS18-214ENST00000580003 LRCH2Q5VUJ6 765 aa7□□□□□ -1.29
SS18-214ENST00000580003 RTL10Q7L3V2 364 aa7□□□□□ -1.29
SS18-214ENST00000580003 FSIP1Q8NA03 581 aa7□□□□□ -1.29
SS18-214ENST00000580003 IP6K1Q92551 441 aa7□□□□□ -1.29
SS18-214ENST00000580003 EME1Q96AY2 570 aa7□□□□□ -1.29
SS18-214ENST00000580003 ARRDC3Q96B67 414 aa7□□□□□ -1.29
SS18-214ENST00000580003 VCPIP1Q96JH7 1222 aa7□□□□□ -1.29
SS18-214ENST00000580003 ARL15Q9NXU5 204 aa7□□□□□ -1.29
SS18-214ENST00000580003 SRP68Q9UHB9 627 aaKnown RBP7□□□□□ -1.29
SS18-214ENST00000580003 PKP3Q9Y446 797 aa7□□□□□ -1.29
SS18-214ENST00000580003 A0A1W2PPC1 479 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 H3BNX3 289 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 SEPT4O43236 478 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 GRK6P43250 576 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 RBM5P52756 815 aaKnown RBP eCLIP6.99□□□□□ -1.29
SS18-214ENST00000580003 DCTN1Q14203 1278 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 GRAMD1BQ3KR37 738 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 RFX8Q6ZV50 586 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 SYT13Q7L8C5 426 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 TRAPPC11Q7Z392 1133 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 Q8N9P0 234 aaPredicted RBP6.99□□□□□ -1.29
SS18-214ENST00000580003 KCNJ9Q92806 393 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 KAT2AQ92830 837 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 ZBTB9Q96C00 473 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 FAM167BQ9BTA0 163 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 TRIM31Q9BZY9 425 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 MYLK2Q9H1R3 596 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 PTPRHQ9HD43 1115 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 PCDHA12Q9UN75 941 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 SQORQ9Y6N5 450 aa6.99□□□□□ -1.29
SS18-214ENST00000580003 A0A0G2JK05 382 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 FOXO6A8MYZ6 492 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 PKMP14618 531 aaKnown RBP6.98□□□□□ -1.29
SS18-214ENST00000580003 VEGFAP15692 232 aaPredicted RBP6.98□□□□□ -1.29
SS18-214ENST00000580003 PRPH2P23942 346 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 GSTM2P28161 218 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 AARSP49588 968 aaKnown RBP eCLIP6.98□□□□□ -1.29
SS18-214ENST00000580003 MCM2P49736 904 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 POLGP54098 1239 aaPredicted RBP6.98□□□□□ -1.29
SS18-214ENST00000580003 PRKAA2P54646 552 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 POSTNQ15063 836 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 SMAD1Q15797 465 aaKnown RBP6.98□□□□□ -1.29
SS18-214ENST00000580003 ALG10Q5BKT4 473 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 ALG10BQ5I7T1 473 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 AWAT2Q6E213 333 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 SLC30A9Q6PML9 568 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 PTGR2Q8N8N7 351 aaPredicted RBP6.98□□□□□ -1.29
SS18-214ENST00000580003 FAM110DQ8TAY7 271 aaPredicted RBP6.98□□□□□ -1.29
SS18-214ENST00000580003 SLC25A28Q96A46 364 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 HDHD5Q9BXW7 423 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 FZD3Q9NPG1 666 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 KIF17Q9P2E2 1029 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 RIPOR2Q9Y4F9 1068 aa6.98□□□□□ -1.29
SS18-214ENST00000580003 TMEM272A0A1B0GTI8 110 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 FAM90A20PA6NIJ5 464 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 TFRCP02786 760 aaKnown RBP6.97□□□□□ -1.29
SS18-214ENST00000580003 CYP21A2P08686 494 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 PRTGQ2VWP7 1150 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 HMBOX1Q6NT76 420 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 IGFN1Q86VF2 1251 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 ZNF366Q8N895 744 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 SPATA5Q8NB90 893 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 CSGALNACT1Q8TDX6 532 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 MSI2Q96DH6 328 aaKnown RBP6.97□□□□□ -1.29
SS18-214ENST00000580003 ZNF419Q96HQ0 510 aaPredicted RBP6.97□□□□□ -1.29
SS18-214ENST00000580003 CLPBQ9H078 707 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 TASP1Q9H6P5 420 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 G6PC2Q9NQR9 355 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 ZBTB40Q9NUA8 1239 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 RCE1Q9Y256 329 aa6.97□□□□□ -1.29
SS18-214ENST00000580003 CCNT1O60563 726 aaKnown RBP6.96□□□□□ -1.3
SS18-214ENST00000580003 NBNO60934 754 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 NEURL1O76050 574 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 EPN2O95208 641 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 CHRNB1P11230 501 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 CHN1P15882 459 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 ADD2P35612 726 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 CUL4BQ13620 913 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 ADCK5Q3MIX3 580 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 LRRC24Q50LG9 513 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 ANO1Q5XXA6 986 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 TECPR1Q7Z6L1 1165 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 CCDC25Q86WR0 208 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 VPS52Q8N1B4 723 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 TMEM199Q8N511 208 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 TMEM174Q8WUU8 243 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 NSMCE1Q8WV22 266 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 THAP4Q8WY91 577 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 SDCCAG3Q96C92 435 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 SPAG4Q9NPE6 437 aa6.96□□□□□ -1.3
SS18-214ENST00000580003 NPIPB13A6NJU9 1138 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 A6NNC1 897 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 NPIPB5A8MRT5 1133 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 B4DGG1 531 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 NPIPB4C9JG80 1138 aa6.95□□□□□ -1.3
SS18-214ENST00000580003 ATG13O75143 517 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms