RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PLAAQ9Y263 795 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 AAR2Q9Y312 384 aaKnown RBP8.19□□□□□ -1.1
VPS39-213ENST00000570062 YIPF1Q9Y548 306 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 NR2E3Q9Y5X4 410 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 TANC1Q9C0D5 1861 aa8.19□□□□□ -1.1
VPS39-213ENST00000570062 HTTP42858 3142 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 IGLV3-10A0A075B6K4 115 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 SLC12A8A0AV02 714 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 TYW5A2RUC4 315 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 ARHGAP42A6NI28 874 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 DRGXA6NNA5 263 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 E7ESA3 106 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 E9PAM4 449 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 F5H5T6 163 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 C2CD2LO14523 706 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 TRDMT1O14717 391 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 RIPK2O43353 540 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 ANXA9O76027 345 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 NEBLO76041 1014 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 POU2F2P09086 479 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 SRGAP2BP0DMP2 458 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 VARSP26640 1264 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 CDC25CP30307 473 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 HOXA9P31269 272 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 GMPRP36959 345 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 PBX3P40426 434 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 GARSP41250 739 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 VPS41P49754 854 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 RENBPP51606 427 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 OXCT1P55809 520 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 BASP1P80723 227 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 GBE1Q04446 702 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 AP1B1Q10567 949 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 EFEMP1Q12805 493 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 ILF2Q12905 390 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 SEMA5AQ13591 1074 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 TRADDQ15628 312 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 KLHL38Q2WGJ6 581 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 PARP15Q460N3 678 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 C5orf22Q49AR2 442 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 CEP85LQ5SZL2 805 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 LGSNQ5TDP6 509 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 EMC10Q5UCC4 262 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 MANEALQ5VSG8 457 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 FAM117BQ6P1L5 589 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 CYS1Q717R9 158 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 C16orf59Q7L2K0 433 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 TAOK1Q7L7X3 1001 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 DNAJB7Q7Z6W7 309 aaPredicted RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 CCDC25Q86WR0 208 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 PALM2Q8IXS6 379 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 CCDC13Q8IYE1 715 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 UMODL1-AS1Q8N2C9 162 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 BBS5Q8N3I7 341 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 KIAA1958Q8N8K9 716 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 MRPL43Q8N983 215 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 ZNF557Q8N988 423 aaPredicted RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 ADAM32Q8TC27 787 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 PYROXD1Q8WU10 500 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 CPT1BQ92523 772 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 MRPS31Q92665 395 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 PRCCQ92733 491 aaPredicted RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 P2RY11Q96G91 374 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 B3GALT6Q96L58 329 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 GDAP1L1Q96MZ0 367 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 NEUROG2Q9H2A3 272 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 PRDM12Q9H4Q4 367 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 CALCOCO1Q9P1Z2 691 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 SAE1Q9UBE0 346 aaPredicted RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 SFMBT1Q9UHJ3 866 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 XPO7Q9UIA9 1087 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 MAGED2Q9UNF1 606 aaPredicted RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 INSL5Q9Y5Q6 135 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 TDRD15B5MCY1 1934 aaKnown RBP8.18□□□□□ -1.1
VPS39-213ENST00000570062 COL4A6Q14031 1691 aa8.18□□□□□ -1.1
VPS39-213ENST00000570062 TRIP11Q15643 1979 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 CXorf51AA0A1B0GTR3 108 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 AGPSO00116 658 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 RASGRF2O14827 1237 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 MATN3O15232 486 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 TEX28O15482 410 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 CDH16O75309 829 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 GLUD1P00367 558 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 AGTP01019 485 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 HNRNPA1P09651 372 aaKnown RBP eCLIP8.17□□□□□ -1.1
VPS39-213ENST00000570062 ZSCAN5DPP0CG00 497 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 HMGA1P17096 107 aaKnown RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 ATF6P18850 670 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 CES1P23141 567 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 OAS2P29728 719 aaKnown RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 IFNAR2P48551 515 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 GPR15P49685 360 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 PITX1P78337 314 aaPredicted RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 GABPB1Q06547 395 aaPredicted RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 TWF1Q12792 350 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 LAMB3Q13751 1172 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 AUHQ13825 339 aaKnown RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 HNRNPDQ14103 355 aaKnown RBP8.17□□□□□ -1.1
VPS39-213ENST00000570062 SLC29A2Q14542 456 aa8.17□□□□□ -1.1
VPS39-213ENST00000570062 KCNJ11Q14654 390 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 265.7 ms