RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ELAVL3Q14576 367 aaKnown RBP17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 TPD52L1Q16890 204 aaPredicted RBP17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 DPCR1Q3MIW9 517 aa17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 RNF219Q5W0B1 726 aaPredicted RBP17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 OR6B2Q6IFH4 312 aa17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 MMAAQ8IVH4 418 aaKnown RBP17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 SNX19Q92543 992 aa17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 PGAP3Q96FM1 320 aaPredicted RBP17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 TUBGCP2Q9BSJ2 902 aa17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 NEUROG2Q9H2A3 272 aa17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 DACH1Q9UI36 760 aa17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 SNX11Q9Y5W9 270 aa17.75■□□□□ 0.43
VPS9D1-203ENST00000563798 MID1O15344 667 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 PCDHGA12O60330 932 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 DKK1O94907 266 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 ADH1BP00325 375 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 FTH1P19P0C7X4 201 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 GOT1P17174 413 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 MZF1P28698 734 aaPredicted RBP17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 NNMTP40261 264 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 CCR5P51681 352 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 RACK1P63244 317 aaKnown RBP17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 KCNMA1Q12791 1236 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 SUZ12Q15022 739 aaKnown RBP17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 OTUD1Q5VV17 481 aaPredicted RBP17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 CHCHD4Q8N4Q1 142 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 OR2T34Q8NGX1 318 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 FRS2Q8WU20 508 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 RNF34Q969K3 372 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 IGSF8Q969P0 613 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 RPL10LQ96L21 214 aaKnown RBP17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 NPY6RQ99463 290 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 NAA15Q9BXJ9 866 aaKnown RBP17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 ZMIZ1Q9ULJ6 1067 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 TBC1D30Q9Y2I9 924 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 CEP83Q9Y592 693 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 OR51B4Q9Y5P0 310 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 HS3ST4Q9Y661 456 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 ZFHX4Q86UP3 3567 aa17.74■□□□□ 0.43
VPS9D1-203ENST00000563798 A0A1W2PP55 124 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 LRRC72A6NJI9 287 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 VILLO15195 856 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 ATP9BO43861 1147 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 DFNA5O60443 496 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 CLDN11O75508 207 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 GRAP2O75791 330 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 PDGFRAP16234 1089 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 CTSKP43235 329 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 CXCR3P49682 368 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 KLHDC7AQ5VTJ3 777 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 NCEH1Q6PIU2 408 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 CLEC17AQ6ZS10 378 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 SND1Q7KZF4 910 aaKnown RBP eCLIP17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 STK40Q8N2I9 435 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 AADATQ8N5Z0 425 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 TMEM35BQ8NCS4 154 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 GANCQ8TET4 914 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 RPRD1AQ96P16 312 aaPredicted RBP17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 SPAG5Q96R06 1193 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 CDC6Q99741 560 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 FEM1AQ9BSK4 669 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 ARHGEF38Q9NXL2 777 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 APOBEC2Q9Y235 224 aaKnown RBP17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 ASPMQ8IZT6 3477 aa17.73■□□□□ 0.43
VPS9D1-203ENST00000563798 CHD6Q8TD26 2715 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 IGF2RP11717 2491 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 M0QYT0 321 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 PAGE1O75459 146 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 RNASEH2AO75792 299 aaKnown RBP17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 CAPNS1P04632 268 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 PNMA6AP0CW24 399 aaPredicted RBP17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 CYP11B1P15538 503 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 STK19P49842 368 aaPredicted RBP17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 CDH4P55283 916 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 KCNJ12Q14500 433 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 DRAP1Q14919 205 aaPredicted RBP17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 KCNT1Q5JUK3 1230 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 BRMS1LQ5PSV4 323 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 ACBD5Q5T8D3 534 aaPredicted RBP17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 SLCO6A1Q86UG4 719 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 CIR1Q86X95 450 aaPredicted RBP17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 ZNF683Q8IZ20 524 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 OR52K2Q8NGK3 314 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 SETD7Q8WTS6 366 aaKnown RBP17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 OMDQ99983 421 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 KDM4CQ9H3R0 1056 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 SYNCQ9H7C4 482 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 EBF2Q9HAK2 575 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 PIGVQ9NUD9 493 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 VANGL2Q9ULK5 521 aa17.72■□□□□ 0.43
VPS9D1-203ENST00000563798 CFAP47Q6ZTR5 3102 aa17.71■□□□□ 0.43
VPS9D1-203ENST00000563798 SYNJ2BP-COX16A0A087WUM0 186 aa17.71■□□□□ 0.43
VPS9D1-203ENST00000563798 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.71■□□□□ 0.43
VPS9D1-203ENST00000563798 ALOX15BO15296 676 aa17.71■□□□□ 0.43
VPS9D1-203ENST00000563798 SLC7A4O43246 635 aa17.71■□□□□ 0.43
VPS9D1-203ENST00000563798 LATO43561 262 aa17.71■□□□□ 0.43
VPS9D1-203ENST00000563798 F9P00740 461 aa17.71■□□□□ 0.43
VPS9D1-203ENST00000563798 EEF1GP26641 437 aaKnown RBP17.71■□□□□ 0.43
VPS9D1-203ENST00000563798 CCT8P50990 548 aa17.71■□□□□ 0.43
VPS9D1-203ENST00000563798 IRAK1P51617 712 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 190.8 ms