RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 SCUBE2Q9NQ36 999 aa16.47■□□□□ 0.23
SCFD1-224ENST00000557713 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.47■□□□□ 0.23
SCFD1-224ENST00000557713 TJP2Q9UDY2 1190 aa16.47■□□□□ 0.23
SCFD1-224ENST00000557713 KNL1Q8NG31 2342 aa16.47■□□□□ 0.23
SCFD1-224ENST00000557713 MED7O43513 233 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 LETM1O95202 739 aaPredicted RBP16.46■□□□□ 0.23
SCFD1-224ENST00000557713 PSMD8P48556 350 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 STK19P49842 368 aaPredicted RBP16.46■□□□□ 0.23
SCFD1-224ENST00000557713 PLK1P53350 603 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 ADPRHP54922 357 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 NUCB2P80303 420 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 ACAP1Q15027 740 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 TAF5Q15542 800 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 SOWAHCQ53LP3 525 aaPredicted RBP16.46■□□□□ 0.23
SCFD1-224ENST00000557713 CCDC157Q569K6 752 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 RNF219Q5W0B1 726 aaPredicted RBP16.46■□□□□ 0.23
SCFD1-224ENST00000557713 PDCD7Q8N8D1 485 aaKnown RBP16.46■□□□□ 0.23
SCFD1-224ENST00000557713 ATP6V0D2Q8N8Y2 350 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 OR14C36Q8NHC7 312 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 FRS2Q8WU20 508 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 FAM131CQ96AQ9 280 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 MED15Q96RN5 788 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 ACP6Q9NPH0 428 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 AASDHPPTQ9NRN7 309 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 TPX2Q9ULW0 747 aaKnown RBP16.46■□□□□ 0.23
SCFD1-224ENST00000557713 CEP83Q9Y592 693 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.46■□□□□ 0.23
SCFD1-224ENST00000557713 CABIN1Q9Y6J0 2220 aa16.46■□□□□ 0.23
SCFD1-224ENST00000557713 COL5A1P20908 1838 aaPredicted RBP16.45■□□□□ 0.22
SCFD1-224ENST00000557713 F5H5T6 163 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 LATO43561 262 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 VAV1P15498 845 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 MZF1P28698 734 aaPredicted RBP16.45■□□□□ 0.22
SCFD1-224ENST00000557713 DRD3P35462 400 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 NNMTP40261 264 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 VASPP50552 380 aaPredicted RBP16.45■□□□□ 0.22
SCFD1-224ENST00000557713 STX17P56962 302 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 SULT2A1Q06520 285 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 ELAVL3Q14576 367 aaKnown RBP16.45■□□□□ 0.22
SCFD1-224ENST00000557713 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.45■□□□□ 0.22
SCFD1-224ENST00000557713 TMPRSS12Q86WS5 348 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 CCAR2Q8N163 923 aaKnown RBP16.45■□□□□ 0.22
SCFD1-224ENST00000557713 WDTC1Q8N5D0 677 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 SRRTQ9BXP5 876 aaKnown RBP16.45■□□□□ 0.22
SCFD1-224ENST00000557713 GDF3Q9NR23 364 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 ARHGAP20Q9P2F6 1191 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 SLC12A6Q9UHW9 1150 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 CTNND2Q9UQB3 1225 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 PCDHGA1Q9Y5H4 931 aa16.45■□□□□ 0.22
SCFD1-224ENST00000557713 CELSR3Q9NYQ7 3312 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3DA0A087WVF3 549 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3IA0A087WXS9 549 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3EA0A087X179 549 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3KA0A087X1G2 549 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3FA6NER0 549 aaPredicted RBP16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3LB9A6J9 549 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 E9PAM4 449 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TLR4O00206 839 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 CBX4O00257 560 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 ENC1O14682 589 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 THAP12O43422 761 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 LDOC1O95751 146 aaPredicted RBP16.44■□□□□ 0.22
SCFD1-224ENST00000557713 IL1BP01584 269 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 ITGAVP06756 1048 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3HP0C7X1 549 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 PDGFRAP16234 1089 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 ABCB4P21439 1286 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 GNA15P30679 374 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 NUMBP49757 651 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 METAP1P53582 386 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 NXPH1P58417 271 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 PDCLQ13371 301 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TTC39BQ5VTQ0 682 aaPredicted RBP16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3GQ6DHY5 549 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3CQ6IPX1 549 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 CXorf57Q6NSI4 855 aaKnown RBP16.44■□□□□ 0.22
SCFD1-224ENST00000557713 ENOSF1Q7L5Y1 443 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 CIR1Q86X95 450 aaPredicted RBP16.44■□□□□ 0.22
SCFD1-224ENST00000557713 TBC1D3Q8IZP1 549 aaPredicted RBP16.44■□□□□ 0.22
SCFD1-224ENST00000557713 ALG14Q96F25 216 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 SERAC1Q96JX3 654 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 CNDP2Q96KP4 475 aaKnown RBP16.44■□□□□ 0.22
SCFD1-224ENST00000557713 SLC2A13Q96QE2 648 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 SPAG5Q96R06 1193 aa16.44■□□□□ 0.22
SCFD1-224ENST00000557713 A0A087WV48 116 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 A0A1B0GVM2 712 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 TCAF2A6NFQ2 919 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 BECN2A8MW95 431 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 BIN1O00499 593 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 YKT6O15498 198 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 GLI1P08151 1106 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 C1SP09871 688 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 SLC2A3P11169 496 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 EPHA8P29322 1005 aaPredicted RBP16.43■□□□□ 0.22
SCFD1-224ENST00000557713 RXRGP48443 463 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 PPP2CBP62714 309 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 PPP2CAP67775 309 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 BNIP3Q12983 259 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 DNAJC3Q13217 504 aa16.43■□□□□ 0.22
SCFD1-224ENST00000557713 FBXL22Q6P050 247 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms