RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 PER2O15055 1255 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 FYB1O15117 783 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 CNTN5O94779 1100 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ALDOCP09972 364 aaKnown RBP3.25□□□□□ -1.89
CD44-234ENST00000531873 RFPL3SP0C7P2 107 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ACADMP11310 421 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 CD72P21854 359 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 DRD4P21917 467 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 TM4SF1P30408 202 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 HOXD13P35453 343 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 MLH1P40692 756 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 GRIA3P42263 894 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ZNF84P51523 738 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 NAP1L1P55209 391 aaKnown RBP3.25□□□□□ -1.89
CD44-234ENST00000531873 CDH15P55291 814 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 CYP4F2P78329 520 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ARHGAP8P85298 464 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 NUCB1Q02818 461 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 DCTN2Q13561 401 aaKnown RBP3.25□□□□□ -1.89
CD44-234ENST00000531873 TUBA3CQ13748 450 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 BYSLQ13895 437 aaKnown RBP3.25□□□□□ -1.89
CD44-234ENST00000531873 EIF4A2Q14240 407 aaKnown RBP3.25□□□□□ -1.89
CD44-234ENST00000531873 SEMA3AQ14563 771 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 MFSD13AQ14CX5 517 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 PLAC9Q5JTB6 97 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 GJB7Q6PEY0 223 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 TUBA3EQ6PEY2 450 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ATF7IPQ6VMQ6 1270 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 Q6YL49 198 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 MDGA2Q7Z553 956 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 SPRED1Q7Z699 444 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 GALNT7Q86SF2 657 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ULK2Q8IYT8 1036 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 OR8H2Q8N162 312 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 VPS52Q8N1B4 723 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 TMTC2Q8N394 836 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ZNF366Q8N895 744 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 RAB40AQ8WXH6 277 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 SH3KBP1Q96B97 665 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ZNF503Q96F45 646 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ZNF845Q96IR2 970 aaPredicted RBP3.25□□□□□ -1.89
CD44-234ENST00000531873 CDK5RAP1Q96SZ6 601 aaKnown RBP3.25□□□□□ -1.89
CD44-234ENST00000531873 CD180Q99467 661 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 GATA5Q9BWX5 397 aaPredicted RBP3.25□□□□□ -1.89
CD44-234ENST00000531873 CIPCQ9C0C6 399 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 MUC13Q9H3R2 512 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 EPHX3Q9H6B9 360 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 PPP1R14DQ9NXH3 145 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ALKBH4Q9NXW9 302 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 HCN3Q9P1Z3 774 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 UPB1Q9UBR1 384 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 SUFUQ9UMX1 484 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 PSAT1Q9Y617 370 aa3.25□□□□□ -1.89
CD44-234ENST00000531873 ARHGEF17Q96PE2 2063 aaPredicted RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 GRID2IPA4D2P6 1211 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 AGAP14A8MT82 685 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 TEX22C9J3V5 150 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 TSPAN4O14817 238 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 MGST3O14880 152 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 SYN3O14994 580 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 TMCC2O75069 709 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 GJB3O75712 270 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 TTLL1O95922 423 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 TUBB4AP04350 444 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 ADH4P08319 380 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 CYP4B1P13584 511 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 NDUFB7P17568 137 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 PSMA4P25789 261 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 TYK2P29597 1187 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 ADRA1BP35368 520 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 HOXD12P35452 270 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 GJC1P36383 396 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 MPLP40238 635 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 CCT8P50990 548 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 RPS6KA3P51812 740 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 EFNA5P52803 228 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 COPB1P53618 953 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 CLNS1AP54105 237 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 ARF3P61204 181 aaPredicted RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 RPS3AP61247 264 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 BLOC1S1P78537 153 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 ARF1P84077 181 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 FOXI1Q12951 378 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 ALKBH1Q13686 389 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 IL13RA2Q14627 380 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 NAA25Q14CX7 972 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 LARS2Q15031 903 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 CNGA3Q16281 694 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 AP5B1Q2VPB7 878 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 AARS2Q5JTZ9 985 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 PCID2Q5JVF3 399 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 LY6G5CQ5SRR4 150 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 PDXDC1Q6P996 788 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 ENOSF1Q7L5Y1 443 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 CPLX4Q7Z7G2 160 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 BRSK2Q8IWQ3 736 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 CNTROBQ8N137 903 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 C1orf131Q8NDD1 294 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 ADPRHL1Q8NDY3 354 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 SETD9Q8NE22 299 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms