RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 CEP76Q8TAP6 659 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 FOXJ1Q92949 421 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 PCMTD1Q96MG8 357 aaPredicted RBP9.63□□□□□ -0.87
HDAC3-215ENST00000519474 HSPA12BQ96MM6 686 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 CFAP57Q96MR6 1250 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 RPRD1AQ96P16 312 aaPredicted RBP9.63□□□□□ -0.87
HDAC3-215ENST00000519474 SPAG5Q96R06 1193 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 FEM1AQ9BSK4 669 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 EDEM2Q9BV94 578 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 RSPH9Q9H1X1 276 aaPredicted RBP9.63□□□□□ -0.87
HDAC3-215ENST00000519474 CAPN10Q9HC96 672 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 STAP1Q9ULZ2 295 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 TBC1D30Q9Y2I9 924 aa9.63□□□□□ -0.87
HDAC3-215ENST00000519474 PI4KAP42356 2102 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 ATXN2Q99700 1313 aaKnown RBP9.62□□□□□ -0.87
HDAC3-215ENST00000519474 A0A1B0GVM2 712 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 TCAF2A6NFQ2 919 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 KCNK5O95279 499 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 MOCS3O95396 460 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 GJB6O95452 261 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 ENGP17813 658 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 CALRP27797 417 aaKnown RBP9.62□□□□□ -0.87
HDAC3-215ENST00000519474 HOXD12P35452 270 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 DPP6P42658 865 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 STK19P49842 368 aaPredicted RBP9.62□□□□□ -0.87
HDAC3-215ENST00000519474 ZNF165P49910 485 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 VASPP50552 380 aaPredicted RBP9.62□□□□□ -0.87
HDAC3-215ENST00000519474 CDH4P55283 916 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 OXCT1P55809 520 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 CENPCQ03188 943 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 ZBTB16Q05516 673 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 NR1I3Q14994 352 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 SETDB1Q15047 1291 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 RABGAP1LQ5R372 815 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 SYCP2LQ5T4T6 812 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 N4BP2L1Q5TBK1 243 aaPredicted RBP9.62□□□□□ -0.87
HDAC3-215ENST00000519474 DCAF12L1Q5VU92 463 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 WDR59Q6PJI9 974 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 TRIM72Q6ZMU5 477 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 SND1Q7KZF4 910 aaKnown RBP eCLIP9.62□□□□□ -0.87
HDAC3-215ENST00000519474 EGFL6Q8IUX8 553 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 STK40Q8N2I9 435 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 JOSD2Q8TAC2 188 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 FRS2Q8WU20 508 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 RXFP2Q8WXD0 754 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 CENPIQ92674 756 aaPredicted RBP9.62□□□□□ -0.87
HDAC3-215ENST00000519474 HAPLN3Q96S86 360 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 AGPAT1Q99943 283 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 NAT10Q9H0A0 1025 aaKnown RBP9.62□□□□□ -0.87
HDAC3-215ENST00000519474 NEUROG2Q9H2A3 272 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 FBRSQ9HAH7 460 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 TMEM9BQ9NQ34 198 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 MPP6Q9NZW5 540 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 DCHS1Q96JQ0 3298 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 ZNF292O60281 2723 aa9.62□□□□□ -0.87
HDAC3-215ENST00000519474 CKAP5Q14008 2032 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 TNRC6BQ9UPQ9 1833 aaKnown RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 ITIH6Q6UXX5 1313 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 SPTBN4Q9H254 2564 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 IGLV3-10A0A075B6K4 115 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 TCRBV5S1A1TA0A578 114 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 C2CD4BA6NLJ0 364 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 SIGLEC16A6NMB1 481 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 ARHGAP33O14559 1287 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 GIPC1O14908 333 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 ATP9BO43861 1147 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 CLDN11O75508 207 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 MT-CO1P00395 513 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 DNTTP04053 509 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 CFIP05156 583 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 VAV1P15498 845 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 SLC8A1P32418 973 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 RFC1P35251 1148 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 ADRA1BP35368 520 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 ATP11AP98196 1134 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 GFPT1Q06210 699 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 SULT2A1Q06520 285 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 CLEC16AQ2KHT3 1053 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 C15orf59Q2T9L4 293 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 UAP1L1Q3KQV9 507 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 WDR45BQ5MNZ6 344 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 TTC39BQ5VTQ0 682 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 DAB2IPQ5VWQ8 1189 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 RNF219Q5W0B1 726 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 ZNF776Q68DI1 518 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 ACAD10Q6JQN1 1059 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 FAM131BQ86XD5 332 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 CACUL1Q86Y37 369 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 PHF13Q86YI8 300 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 MMAAQ8IVH4 418 aaKnown RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 OR2I1PQ8NGU4 316 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 BAP1Q92560 729 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 PPP1R9BQ96SB3 815 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 PSMB7Q99436 277 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 C11orf70Q9BRQ4 267 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 SYT11Q9BT88 431 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 BTBD1Q9H0C5 482 aa9.61□□□□□ -0.87
HDAC3-215ENST00000519474 C6orf106Q9H6K1 298 aaPredicted RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 METTL5Q9NRN9 209 aaKnown RBP9.61□□□□□ -0.87
HDAC3-215ENST00000519474 FBXL12Q9NXK8 326 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms