RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TTBK2Q6IQ55 1244 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 CHSY3Q70JA7 882 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 RHOT1Q8IXI2 618 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 TMEM35BQ8NCS4 154 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 TXNDC15Q96J42 360 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 AIFM2Q9BRQ8 373 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 TARS2Q9BW92 718 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 OR2B2Q9GZK3 357 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 SP140LQ9H930 580 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 WDR41Q9HAD4 459 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 THG1LQ9NWX6 298 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 FETUBQ9UGM5 382 aa12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 PTBP2Q9UKA9 531 aaKnown RBP12.3□□□□□ -0.44
LIMCH1-213ENST00000511496 TIAM2Q8IVF5 1701 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 MTSS1O43312 755 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 AVILO75366 819 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 SCO1O75880 301 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 ARHGEF15O94989 841 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 CCDC159P0C7I6 412 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 CCND2P30279 289 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 CCDC142Q17RM4 750 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 FAM205BPQ63HN1 556 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 DCUN1D2Q6PH85 259 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 CBR4Q8N4T8 237 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 CPT1BQ92523 772 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 SNX19Q92543 992 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 CLSTN3Q9BQT9 956 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 PCIF1Q9H4Z3 704 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 PLSCR3Q9NRY6 295 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 TMEM9Q9P0T7 183 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 BCORQ6W2J9 1755 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 ATRNL1Q5VV63 1379 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 FAM149AA5PLN7 773 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 C12orf71A8MTZ7 269 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 CXorf49A8MYA2 514 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 EDIL3O43854 480 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 BCAS2O75934 225 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 POLR2IP36954 125 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 DPP6P42658 865 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 GPD2P43304 727 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC12A3P55017 1021 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 LSM3P62310 102 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 GTF2IP78347 998 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC10A2Q12908 348 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 IKQ13123 557 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC26A11Q86WA9 606 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 PPIL6Q8IXY8 311 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 LGI2Q8N0V4 545 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 MYCT1Q8N699 235 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 TP53I13Q8NBR0 393 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 FLAD1Q8NFF5 587 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 OR5H6Q8NGV6 325 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 ADI1Q9BV57 179 aa12.29□□□□□ -0.44
LIMCH1-213ENST00000511496 E2F8A0AVK6 867 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 IL32P24001 234 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 CASP3P42574 277 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 ECE1P42892 770 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 NRLP54845 237 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 TNK2Q07912 1038 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 CETN1Q12798 172 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 CRTC3Q6UUV7 619 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 MFSD7Q6UXD7 560 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 FLCNQ8NFG4 579 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 ANGPTL6Q8NI99 470 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 MBOAT7Q96N66 472 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 ISCA1Q9BUE6 129 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 DGCR6LQ9BY27 220 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 NARFLQ9H6Q4 476 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 NOCTQ9UK39 431 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 TESMINQ9Y4I5 508 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 C10orf71Q711Q0 1435 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 ERVH48-1M5A8F1 160 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 POLR1CO15160 346 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 B4GALT4O60513 344 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 ALDH1A2O94788 518 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 TMEM63AO94886 807 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 SEMA3DO95025 777 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 PHKG2P15735 406 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 PIK3R1P27986 724 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 TMBIM6P55061 237 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 HERC3Q15034 1050 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 CLEC16AQ2KHT3 1053 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 SLFN13Q68D06 897 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 IFNL2Q8IZJ0 200 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 PCDH20Q8N6Y1 951 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 ZBTB38Q8NAP3 1195 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 PDPRQ8NCN5 879 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 YME1L1Q96TA2 773 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 NAP1L4Q99733 375 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 C12orf10Q9HB07 376 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 SLC38A10Q9HBR0 1119 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 TOR4AQ9NXH8 423 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 ENPP3O14638 875 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 NAGAP17050 411 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 CTSWP56202 376 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 FPGSQ05932 587 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 FCHO2Q0JRZ9 810 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 TRIM32Q13049 653 aa12.28□□□□□ -0.44
LIMCH1-213ENST00000511496 TRIM25Q14258 630 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms