RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 GNPTGQ9UJJ9 305 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 A0A087X0T9 212 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 NOTOA8MTQ0 251 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 OR6A2O95222 327 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 PRG2P13727 222 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 SCNN1DP51172 638 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 SKP1P63208 163 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 SHQ1Q6PI26 577 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 SPOCD1Q6ZMY3 1216 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 OFCC1Q8IZS5 231 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 GPATCH1Q9BRR8 931 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 TSR3Q9UJK0 312 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 NCAPD2Q15021 1401 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 ASXL2Q76L83 1435 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 HACD1B0YJ81 288 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 NUDT17P0C025 328 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 USP17L8P0C7I0 530 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 COX4I1P13073 169 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 NR2C2P49116 596 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 PRKCEQ02156 737 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 CDH17Q12864 832 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 ACAP1Q15027 740 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 ZCCHC9Q8N567 271 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 KBTBD7Q8WVZ9 684 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 CINPQ9BW66 212 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 PUS3Q9BZE2 481 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 COA1Q9GZY4 146 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 ANKHQ9HCJ1 492 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 ANKEF1Q9NU02 776 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 MAGEL2Q9UJ55 1249 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 FLT1P17948 1338 aa11.42□□□□□ -0.58
LIMCH1-208ENST00000508501 USP17L3A6NCW0 530 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 USP17L4A6NCW7 530 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 SMIM22K7EJ46 135 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 MPZL2O60487 215 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 PLA2G6O60733 806 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 NAMPTP43490 491 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 ARF5P84085 180 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 TRIM32Q13049 653 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 CNSTQ6PJW8 725 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 CRTC3Q6UUV7 619 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 USP17L1Q7RTZ2 530 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 TBC1D10CQ8IV04 446 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 SLITRK4Q8IW52 837 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 FAM20CQ8IXL6 584 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 AKAP1Q92667 903 aaKnown RBP eCLIP11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 HOPXQ9BPY8 73 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 SCAF8Q9UPN6 1271 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 DNAJA2O60884 412 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 IDH2P48735 452 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 ELP6Q0PNE2 266 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 CBFBQ13951 182 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 NRF1Q16656 503 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 SIRT2Q8IXJ6 389 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 C15orf40Q8WUR7 153 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 THAP2Q9H0W7 228 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 TRPV5Q9NQA5 729 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 VPS4AQ9UN37 437 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 SIK3Q9Y2K2 1263 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 DHRS12A0PJE2 317 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 RGS10O43665 173 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 MAGEC1O60732 1142 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 SCGNO76038 276 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 FBXO21O94952 628 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 FAM153BP0C7A2 387 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 CYP2A7P20853 494 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 SP100P23497 879 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 PSMA1P25786 263 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 DSG3P32926 999 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 TWF1Q12792 350 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 SIPA1Q96FS4 1042 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 AP1S3Q96PC3 154 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 VPS35Q96QK1 796 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 RIT2Q99578 217 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 MTMR12Q9C0I1 747 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 FAM49AQ9H0Q0 323 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 PLK2Q9NYY3 685 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 TRPC4Q9UBN4 977 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 MRPS7Q9Y2R9 242 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 CAPN6Q9Y6Q1 641 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 KCNQ3O43525 872 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 MAGEA8P43361 318 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 GPR15P49685 360 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 PLCL1Q15111 1095 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 PCSK7Q16549 785 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 CYP2R1Q6VVX0 501 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 RPTNQ6XPR3 784 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 RASAL3Q86YV0 1011 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 EGFL6Q8IUX8 553 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 DENND6BQ8NEG7 585 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 YTHDF1Q9BYJ9 559 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 KIAA1683Q9H0B3 1180 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 NINJ2Q9NZG7 142 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 IGSF9BQ9UPX0 1349 aa11.41□□□□□ -0.58
LIMCH1-208ENST00000508501 RB1P06400 928 aa11.4□□□□□ -0.58
LIMCH1-208ENST00000508501 GSTT2BP0CG30 244 aa11.4□□□□□ -0.58
LIMCH1-208ENST00000508501 UMPSP11172 480 aa11.4□□□□□ -0.58
LIMCH1-208ENST00000508501 NMT1P30419 496 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-208ENST00000508501 ATP7BP35670 1465 aa11.4□□□□□ -0.58
LIMCH1-208ENST00000508501 MNDAP41218 407 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms