RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ARRDC3Q96B67 414 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 FCRL4Q96PJ5 515 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 HERPUD2Q9BSE4 406 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 IL21RQ9HBE5 538 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 THSD1Q9NS62 852 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 SLC22A11Q9NSA0 550 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 UTS2RQ9UKP6 389 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 LAMP3Q9UQV4 416 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 A0A0G2JK05 382 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 ZNF814B7Z6K7 855 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 CHN1P15882 459 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 PRPH2P23942 346 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 STAT1P42224 750 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 SEMA3AQ14563 771 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 CYB5R4Q7L1T6 521 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 SYT13Q7L8C5 426 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 ANKS1BQ7Z6G8 1248 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 KLBQ86Z14 1044 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 DDIASQ8IXT1 998 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 FSIP1Q8NA03 581 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 KAT2AQ92830 837 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 WDR83Q9BRX9 315 aaKnown RBP6.57□□□□□ -1.36
USP40-213ENST00000483216 FAM167BQ9BTA0 163 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 KRTAP17-1Q9BYP8 105 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 ARHGAP39Q9C0H5 1083 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 SEMA4BQ9NPR2 832 aaPredicted RBP6.57□□□□□ -1.36
USP40-213ENST00000483216 MSRB1Q9NZV6 116 aa6.57□□□□□ -1.36
USP40-213ENST00000483216 RHODO00212 210 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 SEPT4O43236 478 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 LCKP06239 509 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 DHRS4L1P0CG22 281 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 CIITAP33076 1130 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 AARSP49588 968 aaKnown RBP eCLIP6.56□□□□□ -1.36
USP40-213ENST00000483216 OAZ1P54368 228 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 RHAGQ02094 409 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 CUL4BQ13620 913 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 ALKBH1Q13686 389 aaKnown RBP6.56□□□□□ -1.36
USP40-213ENST00000483216 PIK3CD-AS1Q5SR53 167 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 TTC39AQ5SRH9 613 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 MOGAT3Q86VF5 341 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 MMP21Q8N119 569 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 FAM110DQ8TAY7 271 aaPredicted RBP6.56□□□□□ -1.36
USP40-213ENST00000483216 SPPL3Q8TCT6 385 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 CSGALNACT1Q8TDX6 532 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 IP6K1Q92551 441 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 GOLGA1Q92805 767 aa6.56□□□□□ -1.36
USP40-213ENST00000483216 MSI2Q96DH6 328 aaKnown RBP6.56□□□□□ -1.36
USP40-213ENST00000483216 MORC2Q9Y6X9 1032 aaPredicted RBP6.56□□□□□ -1.36
USP40-213ENST00000483216 HMGXB3Q12766 1538 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 BAZ1BQ9UIG0 1483 aaKnown RBP6.55□□□□□ -1.36
USP40-213ENST00000483216 CXorf65A6NEN9 183 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 NPIPB13A6NJU9 1138 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 NPIPB5A8MRT5 1133 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 FOXO6A8MYZ6 492 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 NPIPB4C9JG80 1138 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 MSI1O43347 362 aaKnown RBP6.55□□□□□ -1.36
USP40-213ENST00000483216 KRT38O76015 456 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 TK1P04183 234 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 PKMP14618 531 aaKnown RBP6.55□□□□□ -1.36
USP40-213ENST00000483216 HALP42357 657 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 RBM5P52756 815 aaKnown RBP eCLIP6.55□□□□□ -1.36
USP40-213ENST00000483216 PDCLQ13371 301 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 GALNT3Q14435 633 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 SMTNL2Q2TAL5 461 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 VWA5B1Q5TIE3 1220 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 TTLL5Q6EMB2 1281 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 ZNF548Q8NEK5 533 aaPredicted RBP6.55□□□□□ -1.36
USP40-213ENST00000483216 TBC1D20Q96BZ9 403 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 KTI12Q96EK9 354 aaPredicted RBP6.55□□□□□ -1.36
USP40-213ENST00000483216 VCPIP1Q96JH7 1222 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 ISCA1Q9BUE6 129 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 HDHD5Q9BXW7 423 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 FOXP1Q9H334 677 aaPredicted RBP6.55□□□□□ -1.36
USP40-213ENST00000483216 SPAG4Q9NPE6 437 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 ARL15Q9NXU5 204 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 PCDHA12Q9UN75 941 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 ABCC8Q09428 1581 aa6.55□□□□□ -1.36
USP40-213ENST00000483216 ATG13O75143 517 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 TULP3O75386 442 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 NEURL1O76050 574 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 CHRNA5P30532 468 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 ARL4CP56559 192 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 ZBTB16Q05516 673 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 ADCK5Q3MIX3 580 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 LRRC24Q50LG9 513 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 MTFR2Q6P444 385 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 SLC30A9Q6PML9 568 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 IRF2BP2Q7Z5L9 587 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 EME1Q96AY2 570 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 TRIM31Q9BZY9 425 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 PLEKHA2Q9HB19 425 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 DECR2Q9NUI1 292 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 POT1Q9NUX5 634 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 SLC25A13Q9UJS0 675 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 FBXO4Q9UKT5 387 aa6.54□□□□□ -1.36
USP40-213ENST00000483216 A0A1W2PPC1 479 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 IRAK2O43187 625 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 PIP5K1CO60331 668 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 FGF2P09038 288 aa6.53□□□□□ -1.36
USP40-213ENST00000483216 ACP5P13686 325 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms