RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 GGA2Q9UJY4 613 aa5□□□□□ -1.61
USP4-209ENST00000475873 SARDHQ9UL12 918 aa5□□□□□ -1.61
USP4-209ENST00000475873 PLA2G4CQ9UP65 541 aa5□□□□□ -1.61
USP4-209ENST00000475873 DMTF1Q9Y222 760 aa5□□□□□ -1.61
USP4-209ENST00000475873 PCDHB11Q9Y5F2 797 aa5□□□□□ -1.61
USP4-209ENST00000475873 KCNMB2Q9Y691 235 aa5□□□□□ -1.61
USP4-209ENST00000475873 STYXL1Q9Y6J8 313 aa5□□□□□ -1.61
USP4-209ENST00000475873 TRPM6Q9BX84 2022 aa5□□□□□ -1.61
USP4-209ENST00000475873 ABCA4P78363 2273 aa5□□□□□ -1.61
USP4-209ENST00000475873 FLNAP21333 2647 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 AKAP6Q13023 2319 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 LOC101059948A0A1B0GTJ6 334 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 A0A1W2PQH9 124 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 TARSL2A2RTX5 802 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 POM121BA6NF01 834 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 NEMP2A6NFY4 417 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 STMND1H3BQB6 276 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 RNF103O00237 685 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 AQP9O43315 295 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 KRT86O43790 486 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 MAGEC1O60732 1142 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 PPP1R37O75864 691 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 LUC7L3O95232 432 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 CTDNEP1O95476 244 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 CBX6O95503 412 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 NADKO95544 446 aaPredicted RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 CSF2P04141 144 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 RPLP0P05388 317 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 HMBSP08397 361 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 OR52Z1P0C646 297 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 FDPSP14324 419 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 RPS6KB1P23443 525 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 CD82P27701 267 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 MZF1P28698 734 aaPredicted RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 PLA2G4AP47712 749 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 HNRNPKP61978 463 aaKnown RBP eCLIP4.99□□□□□ -1.61
USP4-209ENST00000475873 ARID5AQ03989 594 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 PDE4CQ08493 712 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 EIF2B5Q13144 721 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 C1orf61Q13536 156 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 FGL2Q14314 439 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 ARID5BQ14865 1188 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 SMTNL2Q2TAL5 461 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 ZNF284Q2VY69 593 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 KLHDC10Q6PID8 442 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 SND1Q7KZF4 910 aaKnown RBP eCLIP4.99□□□□□ -1.61
USP4-209ENST00000475873 DPH6Q7L8W6 267 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 PRPF39Q86UA1 669 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 TMEM135Q86UB9 458 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 PRIMA1Q86XR5 153 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 DENND1CQ8IV53 801 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 SFTPA2Q8IWL1 248 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 CCDC13Q8IYE1 715 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 ZNF295-AS1Q8N0V1 137 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 FUKQ8N0W3 1084 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 CPXM2Q8N436 756 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 C4orf32Q8N8J7 132 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 KYQ8NBH2 561 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 B3GALNT2Q8NCR0 500 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 OR5B17Q8NGF7 314 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 FAM174AQ8TBP5 190 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 WFIKKN2Q8TEU8 576 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 DDI1Q8WTU0 396 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 KCNB2Q92953 911 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 NAT6Q93015 286 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 CCDC74AQ96AQ1 378 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 C19orf60Q96EN9 201 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 MYEOVQ96EZ4 313 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 IFT43Q96FT9 208 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 C5orf34Q96MH7 638 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 JAKMIP1Q96N16 626 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 GFM1Q96RP9 751 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 TMUB1Q9BVT8 246 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 SRRTQ9BXP5 876 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 CPEB1Q9BZB8 566 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 TRIM8Q9BZR9 551 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 SPRY4Q9C004 299 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 STRADBQ9C0K7 418 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 CLPBQ9H078 707 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 SEMA6CQ9H3T2 930 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 GSX1Q9H4S2 264 aaPredicted RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 LUZP4Q9P127 313 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 SUN2Q9UH99 717 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 SLCO3A1Q9UIG8 710 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 TLK1Q9UKI8 766 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 AGO2Q9UKV8 859 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 PADI4Q9UM07 663 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 ZFR2Q9UPR6 939 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 SLC5A6Q9Y289 635 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 B3GALT1Q9Y5Z6 326 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 MRPS18BQ9Y676 258 aaKnown RBP4.99□□□□□ -1.61
USP4-209ENST00000475873 CSNK1G3Q9Y6M4 447 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 ZGRF1Q86YA3 2104 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 VPS13CQ709C8 3753 aa4.99□□□□□ -1.61
USP4-209ENST00000475873 MDC1Q14676 2089 aaKnown RBP4.98□□□□□ -1.61
USP4-209ENST00000475873 SPTY2D1-AS1A0A0U1RR47 76 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 TPP1O14773 563 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 RAD51BO15315 384 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 DNAJB5O75953 348 aa4.98□□□□□ -1.61
USP4-209ENST00000475873 C8BP07358 591 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms