RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 C9orf64Q5T6V5 341 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 SYPL2Q5VXT5 272 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 LAYNQ6UX15 382 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 RRAGAQ7L523 313 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 TMPRSS7Q7RTY8 843 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 TAC4Q86UU9 113 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 SETD7Q8WTS6 366 aaKnown RBP10.68□□□□□ -0.7
VPS50-201ENST00000251739 STK32AQ8WU08 396 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 SNX19Q92543 992 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 FAM131CQ96AQ9 280 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 CDC6Q99741 560 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 DKK4Q9UBT3 224 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 SUN2Q9UH99 717 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 XPO7Q9UIA9 1087 aaKnown RBP10.68□□□□□ -0.7
VPS50-201ENST00000251739 ANKRD6Q9Y2G4 727 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 GPSM3Q9Y4H4 160 aa10.68□□□□□ -0.7
VPS50-201ENST00000251739 H0Y8X5 98 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 LUC7L3O95232 432 aaKnown RBP10.67□□□□□ -0.7
VPS50-201ENST00000251739 CTSOP43234 321 aaPredicted RBP10.67□□□□□ -0.7
VPS50-201ENST00000251739 CCT8P50990 548 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 PITX1P78337 314 aaPredicted RBP10.67□□□□□ -0.7
VPS50-201ENST00000251739 KCNH2Q12809 1159 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 TEAD4Q15561 434 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 CST6Q15828 149 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 TMEM259Q4ZIN3 620 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 DCAF6Q58WW2 860 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 KIAA0895LQ68EN5 471 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 DENND1BQ6P3S1 775 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 LRSAM1Q6UWE0 723 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 MMS22LQ6ZRQ5 1243 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 TMEM110Q86TL2 294 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 EHBP1Q8NDI1 1231 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 ADAM32Q8TC27 787 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 NELFBQ8WX92 580 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 TSC1Q92574 1164 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 FAM129BQ96TA1 746 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 DDX50Q9BQ39 737 aaKnown RBP10.67□□□□□ -0.7
VPS50-201ENST00000251739 MIS12Q9H081 205 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 INTS2Q9H0H0 1204 aaKnown RBP10.67□□□□□ -0.7
VPS50-201ENST00000251739 EBF2Q9HAK2 575 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 STIM2Q9P246 746 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 HOOK1Q9UJC3 728 aaKnown RBP10.67□□□□□ -0.7
VPS50-201ENST00000251739 FZD4Q9ULV1 537 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 ERVW-1Q9UQF0 538 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 NAALADL1Q9UQQ1 740 aa10.67□□□□□ -0.7
VPS50-201ENST00000251739 CHD5Q8TDI0 1954 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 EDDM13A0A1B0GTR0 161 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 A0A1W2PPC4 97 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 TARSL2A2RTX5 802 aaKnown RBP10.66□□□□□ -0.7
VPS50-201ENST00000251739 GOLGA6L4A6NEF3 574 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 TTC34A8MYJ7 566 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 E5RJQ4 531 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 VILLO15195 856 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 MID1O15344 667 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 FSBPO95073 299 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 SRPRAP08240 638 aaKnown RBP10.66□□□□□ -0.7
VPS50-201ENST00000251739 CCNYL3P0C7X3 344 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 GRK6P43250 576 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 ACADSBP45954 432 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 GALCP54803 685 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 RACK1P63244 317 aaKnown RBP10.66□□□□□ -0.7
VPS50-201ENST00000251739 CETN1Q12798 172 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 CDH18Q13634 790 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 ISM2Q6H9L7 571 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 KLHL10Q6JEL2 608 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 DHX40Q8IX18 779 aaKnown RBP10.66□□□□□ -0.7
VPS50-201ENST00000251739 CFAP52Q8N1V2 620 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 AADATQ8N5Z0 425 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 FAM149B1Q96BN6 582 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 PRMT1Q99873 361 aaKnown RBP10.66□□□□□ -0.7
VPS50-201ENST00000251739 TRIM62Q9BVG3 475 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 FBXL12Q9NXK8 326 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 SLCO3A1Q9UIG8 710 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 BPTFQ12830 3046 aa10.66□□□□□ -0.7
VPS50-201ENST00000251739 A0A1B0GTQ1 180 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 A0A1W2PR77 199 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 BICDL2A1A5D9 508 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 TYW5A2RUC4 315 aaKnown RBP10.65□□□□□ -0.7
VPS50-201ENST00000251739 BECN2A8MW95 431 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 KCNU1A8MYU2 1149 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 TNFSF14O43557 240 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 LATO43561 262 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 DFNA5O60443 496 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 GNA14O95837 355 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 TRUB2O95900 331 aaKnown RBP10.65□□□□□ -0.7
VPS50-201ENST00000251739 MOCS2O96007 188 aaPredicted RBP10.65□□□□□ -0.7
VPS50-201ENST00000251739 F12P00748 615 aaPredicted RBP10.65□□□□□ -0.7
VPS50-201ENST00000251739 APOEP02649 317 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 AFPP02771 609 aaKnown RBP10.65□□□□□ -0.7
VPS50-201ENST00000251739 WNT1P04628 370 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 TACR2P21452 398 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 DRD3P35462 400 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 CCR5P51681 352 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 ST8SIA6P61647 398 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 YWHAZP63104 245 aaKnown RBP10.65□□□□□ -0.7
VPS50-201ENST00000251739 NUCB2P80303 420 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 PDCLQ13371 301 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 SHBQ15464 509 aa10.65□□□□□ -0.7
VPS50-201ENST00000251739 SMAD1Q15797 465 aaKnown RBP10.65□□□□□ -0.7
VPS50-201ENST00000251739 ZC3H12AQ5D1E8 599 aaKnown RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms