RNA–Protein interactions for RNA: YGR193C

PDX1, Transcript of E3-binding protein of the mitochondrial pyruvate dehydrogenase complex, yeast

Gene PDX1, Length 1,233 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PDX1	YGR193C	ISW1	P38144	1129 aa		4.72	□□□□□ -1.65
PDX1	YGR193C	ALD4	P46367	519 aa	Known RBP	4.72	□□□□□ -1.65
PDX1	YGR193C	RSC2	Q06488	889 aa		4.72	□□□□□ -1.65
PDX1	YGR193C	CPS1	P27614	576 aa		4.71	□□□□□ -1.66
PDX1	YGR193C	PAN5	P38787	379 aa		4.71	□□□□□ -1.66
PDX1	YGR193C	DSE4	P53753	1117 aa		4.71	□□□□□ -1.66
PDX1	YGR193C	MDG1	P53885	366 aa		4.71	□□□□□ -1.66
PDX1	YGR193C	EMG1	Q06287	252 aa	Known RBP	4.71	□□□□□ -1.66
PDX1	YGR193C	BRE4	Q07660	1125 aa		4.71	□□□□□ -1.66
PDX1	YGR193C	CHS2	P14180	963 aa		4.7	□□□□□ -1.66
PDX1	YGR193C	PUP1	P25043	261 aa		4.7	□□□□□ -1.66
PDX1	YGR193C	INP51	P40559	946 aa	Known RBP	4.7	□□□□□ -1.66
PDX1	YGR193C	SUB1	P54000	292 aa	Known RBP	4.7	□□□□□ -1.66
PDX1	YGR193C	MAG2	Q06436	670 aa	Known RBP	4.7	□□□□□ -1.66
PDX1	YGR193C	GIN4	Q12263	1142 aa		4.7	□□□□□ -1.66
PDX1	YGR193C	KTR2	P33550	425 aa		4.69	□□□□□ -1.66
PDX1	YGR193C	ALD3	P54114	506 aa		4.69	□□□□□ -1.66
PDX1	YGR193C	SEA4	P38164	1038 aa		4.68	□□□□□ -1.66
PDX1	YGR193C	CWC22	P53333	577 aa	Known RBP	4.68	□□□□□ -1.66
PDX1	YGR193C	BIO5	P53744	561 aa	Known RBP	4.68	□□□□□ -1.66
PDX1	YGR193C	VPS72	Q03388	795 aa		4.68	□□□□□ -1.66
PDX1	YGR193C	CYC7	P00045	113 aa		4.67	□□□□□ -1.66
PDX1	YGR193C	ASF1	P32447	279 aa		4.67	□□□□□ -1.66
PDX1	YGR193C	SPO74	P45819	413 aa		4.67	□□□□□ -1.66
PDX1	YGR193C	AOS1	Q06624	347 aa		4.67	□□□□□ -1.66
PDX1	YGR193C	PUN1	Q06991	263 aa		4.67	□□□□□ -1.66
PDX1	YGR193C	SOG2	Q08817	791 aa		4.67	□□□□□ -1.66
PDX1	YGR193C	ELM1	P32801	640 aa		4.66	□□□□□ -1.66
PDX1	YGR193C	SWE1	P32944	819 aa		4.66	□□□□□ -1.66
PDX1	YGR193C	NUG1	P40010	520 aa	Known RBP	4.66	□□□□□ -1.66
PDX1	YGR193C	NCE103	P53615	221 aa		4.66	□□□□□ -1.66
PDX1	YGR193C	DEF1	P35732	738 aa	Known RBP	4.65	□□□□□ -1.67
PDX1	YGR193C	POL5	P39985	1022 aa	Known RBP	4.65	□□□□□ -1.67
PDX1	YGR193C	RGD2	P43556	714 aa		4.65	□□□□□ -1.67
PDX1	YGR193C	RLP24	Q07915	199 aa	Known RBP	4.65	□□□□□ -1.67
PDX1	YGR193C	FUS1	P11710	512 aa		4.64	□□□□□ -1.67
PDX1	YGR193C	TOA1	P32773	286 aa		4.64	□□□□□ -1.67
PDX1	YGR193C	BOI1	P38041	980 aa	Known RBP	4.64	□□□□□ -1.67
PDX1	YGR193C	HXT8	P40886	569 aa		4.64	□□□□□ -1.67
PDX1	YGR193C	GUP1	P53154	560 aa		4.64	□□□□□ -1.67
PDX1	YGR193C	YML083C	Q04526	418 aa		4.64	□□□□□ -1.67
PDX1	YGR193C	SRS2	P12954	1174 aa		4.63	□□□□□ -1.67
PDX1	YGR193C	AIM46	P38885	310 aa		4.63	□□□□□ -1.67
PDX1	YGR193C	LEM3	P42838	414 aa		4.63	□□□□□ -1.67
PDX1	YGR193C	SDH1	Q00711	640 aa		4.63	□□□□□ -1.67
PDX1	YGR193C	PUF6	Q04373	656 aa	Known RBP	4.63	□□□□□ -1.67
PDX1	YGR193C	ERS1	P17261	260 aa		4.62	□□□□□ -1.67
PDX1	YGR193C	RPB10	P22139	70 aa		4.62	□□□□□ -1.67
PDX1	YGR193C	MAE1	P36013	669 aa	Known RBP	4.62	□□□□□ -1.67
PDX1	YGR193C	YML020W	Q03722	664 aa		4.62	□□□□□ -1.67
PDX1	YGR193C	CWC15	Q03772	175 aa	Known RBP	4.62	□□□□□ -1.67
PDX1	YGR193C	NOP8	Q08287	484 aa	Predicted RBP	4.62	□□□□□ -1.67
PDX1	YGR193C	ELG1	Q12050	791 aa		4.62	□□□□□ -1.67
PDX1	YGR193C	RNQ1	P25367	405 aa		4.61	□□□□□ -1.67
PDX1	YGR193C	YBR287W	P38355	427 aa		4.61	□□□□□ -1.67
PDX1	YGR193C	OSW7	P43611	510 aa		4.61	□□□□□ -1.67
PDX1	YGR193C	SUT1	P53032	299 aa	Known RBP	4.61	□□□□□ -1.67
PDX1	YGR193C	NOP7	P53261	605 aa	Known RBP	4.61	□□□□□ -1.67
PDX1	YGR193C	SPO71	Q03868	1245 aa		4.61	□□□□□ -1.67
PDX1	YGR193C	HIF1	Q12373	385 aa		4.61	□□□□□ -1.67
PDX1	YGR193C	GCD1	P09032	578 aa	Predicted RBP	4.6	□□□□□ -1.67
PDX1	YGR193C	HVG1	P0CE11	249 aa		4.6	□□□□□ -1.67
PDX1	YGR193C	MSB1	P21339	1137 aa	Known RBP	4.6	□□□□□ -1.67
PDX1	YGR193C	FIR1	P40020	876 aa		4.6	□□□□□ -1.67
PDX1	YGR193C	NEO1	P40527	1151 aa		4.6	□□□□□ -1.67
PDX1	YGR193C	YJR124C	P47159	448 aa		4.6	□□□□□ -1.67
PDX1	YGR193C	KIP3	P53086	805 aa	Known RBP	4.6	□□□□□ -1.67
PDX1	YGR193C	APC11	Q12157	165 aa		4.6	□□□□□ -1.67
PDX1	YGR193C	TIF6	Q12522	245 aa	Known RBP	4.6	□□□□□ -1.67
PDX1	YGR193C	LRG1	P35688	1017 aa		4.59	□□□□□ -1.67
PDX1	YGR193C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
PDX1	YGR193C	NOP2	P40991	618 aa	Known RBP	4.59	□□□□□ -1.67
PDX1	YGR193C	RTS3	P53289	263 aa		4.59	□□□□□ -1.67
PDX1	YGR193C	YNR065C	P53751	1116 aa		4.59	□□□□□ -1.67
PDX1	YGR193C	HAS1	Q03532	505 aa	Known RBP	4.59	□□□□□ -1.67
PDX1	YGR193C	NOB1	Q08444	459 aa	Known RBP	4.59	□□□□□ -1.67
PDX1	YGR193C	RPS0A	P32905	252 aa	Known RBP	4.58	□□□□□ -1.68
PDX1	YGR193C	NTA1	P40354	457 aa		4.58	□□□□□ -1.68
PDX1	YGR193C	ATG36	P46983	293 aa		4.58	□□□□□ -1.68
PDX1	YGR193C	SEG2	P34250	1132 aa		4.57	□□□□□ -1.68
PDX1	YGR193C	FPR3	P38911	411 aa	Known RBP	4.57	□□□□□ -1.68
PDX1	YGR193C	TPO2	P53283	614 aa		4.57	□□□□□ -1.68
PDX1	YGR193C	PNP1	Q05788	311 aa		4.57	□□□□□ -1.68
PDX1	YGR193C	GLO4	Q12320	285 aa		4.57	□□□□□ -1.68
PDX1	YGR193C	PYC2	P32327	1180 aa	Known RBP	4.56	□□□□□ -1.68
PDX1	YGR193C	BRN1	P38170	754 aa		4.56	□□□□□ -1.68
PDX1	YGR193C	RAD55	P38953	406 aa		4.56	□□□□□ -1.68
PDX1	YGR193C	GIC2	Q06648	383 aa		4.56	□□□□□ -1.68
PDX1	YGR193C	UBP5	P39944	805 aa		4.55	□□□□□ -1.68
PDX1	YGR193C	FAR11	P53917	953 aa		4.55	□□□□□ -1.68
PDX1	YGR193C	DOS2	P54858	310 aa		4.55	□□□□□ -1.68
PDX1	YGR193C	IRS4	P36115	615 aa	Known RBP	4.54	□□□□□ -1.68
PDX1	YGR193C	POL12	P38121	705 aa	Predicted RBP	4.54	□□□□□ -1.68
PDX1	YGR193C	PSY2	P40164	858 aa		4.54	□□□□□ -1.68
PDX1	YGR193C	RRN6	P32786	894 aa		4.53	□□□□□ -1.68
PDX1	YGR193C	WHI3	P34761	661 aa	Known RBP	4.53	□□□□□ -1.68
PDX1	YGR193C	FET4	P40988	552 aa		4.53	□□□□□ -1.68
PDX1	YGR193C	LSO1	Q3E827	93 aa		4.53	□□□□□ -1.68
PDX1	YGR193C	BOL3	P39724	118 aa		4.52	□□□□□ -1.69
PDX1	YGR193C	DFG16	Q99234	619 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 22.6 ms