RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 KNDC1Q76NI1 1749 aa21.13■□□□□ 0.97
SNX1-214ENST00000625244 RREB1Q92766 1687 aa21.13■□□□□ 0.97
SNX1-214ENST00000625244 CAMTA1Q9Y6Y1 1673 aa21.13■□□□□ 0.97
SNX1-214ENST00000625244 NUP188Q5SRE5 1749 aa21.12■□□□□ 0.97
SNX1-214ENST00000625244 SPATA31A1Q5TZJ5 1347 aa21.12■□□□□ 0.97
SNX1-214ENST00000625244 YTHDC2Q9H6S0 1430 aaKnown RBP21.12■□□□□ 0.97
SNX1-214ENST00000625244 IFT172Q9UG01 1749 aa21.11■□□□□ 0.97
SNX1-214ENST00000625244 SIRT1Q96EB6 747 aa21.1■□□□□ 0.97
SNX1-214ENST00000625244 RGL3Q3MIN7 710 aa21.08■□□□□ 0.97
SNX1-214ENST00000625244 PRDM11Q9NQV5 511 aa21.07■□□□□ 0.96
SNX1-214ENST00000625244 TRPM3Q9HCF6 1732 aaPredicted RBP21.07■□□□□ 0.96
SNX1-214ENST00000625244 C1QTNF8P60827 252 aa21.06■□□□□ 0.96
SNX1-214ENST00000625244 SAFB2Q14151 953 aaKnown RBP eCLIP21.06■□□□□ 0.96
SNX1-214ENST00000625244 STRN4Q9NRL3 753 aa21.05■□□□□ 0.96
SNX1-214ENST00000625244 PIK3C2GO75747 1445 aa21.04■□□□□ 0.96
SNX1-214ENST00000625244 PDE3BQ13370 1112 aa21.04■□□□□ 0.96
SNX1-214ENST00000625244 SLC4A1APQ9BWU0 796 aaKnown RBP21.04■□□□□ 0.96
SNX1-214ENST00000625244 ANKRD30BQ9BXX2 1392 aa21.04■□□□□ 0.96
SNX1-214ENST00000625244 ALS2Q96Q42 1657 aa21.04■□□□□ 0.96
SNX1-214ENST00000625244 CHRNA2Q15822 529 aa21.03■□□□□ 0.96
SNX1-214ENST00000625244 USP35Q9P2H5 1018 aa21.03■□□□□ 0.96
SNX1-214ENST00000625244 PRAM1Q96QH2 718 aa21.02■□□□□ 0.96
SNX1-214ENST00000625244 ANKARQ7Z5J8 1434 aa21.02■□□□□ 0.96
SNX1-214ENST00000625244 GPRASP1Q5JY77 1395 aa21.01■□□□□ 0.95
SNX1-214ENST00000625244 KIAA0232Q92628 1395 aa21.01■□□□□ 0.95
SNX1-214ENST00000625244 SPATA31E1Q6ZUB1 1445 aa21.01■□□□□ 0.95
SNX1-214ENST00000625244 ACIN1Q9UKV3 1341 aaKnown RBP21.01■□□□□ 0.95
SNX1-214ENST00000625244 CRYBG1Q9Y4K1 1723 aa20.99■□□□□ 0.95
SNX1-214ENST00000625244 BARGINQ6ZT62 677 aa20.99■□□□□ 0.95
SNX1-214ENST00000625244 PDGFDQ9GZP0 370 aaPredicted RBP20.99■□□□□ 0.95
SNX1-214ENST00000625244 NRKQ7Z2Y5 1582 aa20.98■□□□□ 0.95
SNX1-214ENST00000625244 C14orf93Q9H972 538 aaKnown RBP20.98■□□□□ 0.95
SNX1-214ENST00000625244 ANO8Q9HCE9 1232 aaPredicted RBP20.98■□□□□ 0.95
SNX1-214ENST00000625244 GOLGB1Q14789 3259 aaKnown RBP20.98■□□□□ 0.95
SNX1-214ENST00000625244 PAK3O75914 559 aaPredicted RBP20.97■□□□□ 0.95
SNX1-214ENST00000625244 PRR36Q9H6K5 1346 aa20.96■□□□□ 0.95
SNX1-214ENST00000625244 ZBTB7AO95365 584 aa20.95■□□□□ 0.94
SNX1-214ENST00000625244 PTGER2P43116 358 aa20.95■□□□□ 0.94
SNX1-214ENST00000625244 ZC3H6P61129 1189 aaKnown RBP20.95■□□□□ 0.94
SNX1-214ENST00000625244 CFAP70Q5T0N1 1121 aa20.95■□□□□ 0.94
SNX1-214ENST00000625244 DHX57Q6P158 1386 aaKnown RBP20.95■□□□□ 0.94
SNX1-214ENST00000625244 POGKQ9P215 609 aa20.94■□□□□ 0.94
SNX1-214ENST00000625244 CASZ1Q86V15 1759 aa20.93■□□□□ 0.94
SNX1-214ENST00000625244 EVA1CP58658 441 aa20.93■□□□□ 0.94
SNX1-214ENST00000625244 LARP1Q6PKG0 1096 aaKnown RBP20.93■□□□□ 0.94
SNX1-214ENST00000625244 PPARGC1BQ86YN6 1023 aaKnown RBP20.93■□□□□ 0.94
SNX1-214ENST00000625244 HIRIP3Q9BW71 556 aaPredicted RBP20.93■□□□□ 0.94
SNX1-214ENST00000625244 SSH2Q76I76 1423 aa20.93■□□□□ 0.94
SNX1-214ENST00000625244 TCP11L2Q8N4U5 519 aa20.92■□□□□ 0.94
SNX1-214ENST00000625244 MYOM1P52179 1685 aa20.92■□□□□ 0.94
SNX1-214ENST00000625244 NGDNQ8NEJ9 315 aaKnown RBP20.91■□□□□ 0.94
SNX1-214ENST00000625244 SYT17Q9BSW7 474 aa20.91■□□□□ 0.94
SNX1-214ENST00000625244 FHDC1Q9C0D6 1143 aaPredicted RBP20.91■□□□□ 0.94
SNX1-214ENST00000625244 ATF5Q9Y2D1 282 aaPredicted RBP20.91■□□□□ 0.94
SNX1-214ENST00000625244 PLSCR1O15162 318 aa20.89■□□□□ 0.93
SNX1-214ENST00000625244 NUTM2GQ5VZR2 741 aa20.88■□□□□ 0.93
SNX1-214ENST00000625244 PTF1AQ7RTS3 328 aa20.87■□□□□ 0.93
SNX1-214ENST00000625244 DLC1Q96QB1 1528 aa20.87■□□□□ 0.93
SNX1-214ENST00000625244 MINK1Q8N4C8 1332 aaPredicted RBP20.86■□□□□ 0.93
SNX1-214ENST00000625244 PROM2Q8N271 834 aa20.86■□□□□ 0.93
SNX1-214ENST00000625244 BCL11BQ9C0K0 894 aaPredicted RBP20.86■□□□□ 0.93
SNX1-214ENST00000625244 CHD4Q14839 1912 aa20.86■□□□□ 0.93
SNX1-214ENST00000625244 PHRF1Q9P1Y6 1649 aaKnown RBP20.86■□□□□ 0.93
SNX1-214ENST00000625244 TULP4Q9NRJ4 1543 aa20.85■□□□□ 0.93
SNX1-214ENST00000625244 EIF3AQ14152 1382 aaKnown RBP20.85■□□□□ 0.93
SNX1-214ENST00000625244 WASLO00401 505 aaPredicted RBP20.84■□□□□ 0.93
SNX1-214ENST00000625244 THRAP3Q9Y2W1 955 aaKnown RBP20.84■□□□□ 0.93
SNX1-214ENST00000625244 C11orf95C9JLR9 678 aaPredicted RBP20.83■□□□□ 0.93
SNX1-214ENST00000625244 OVOS2A0A0G2JMS6 1433 aa20.83■□□□□ 0.93
SNX1-214ENST00000625244 OVOS2A0A0J9YW53 1432 aa20.83■□□□□ 0.93
SNX1-214ENST00000625244 OVOS2Q6IE36 1432 aa20.83■□□□□ 0.93
SNX1-214ENST00000625244 RGPD3A6NKT7 1758 aaPredicted RBP20.82■□□□□ 0.92
SNX1-214ENST00000625244 RGPD4Q7Z3J3 1758 aa20.82■□□□□ 0.92
SNX1-214ENST00000625244 GIGYF1O75420 1035 aaPredicted RBP20.82■□□□□ 0.92
SNX1-214ENST00000625244 TRAK1Q9UPV9 953 aa20.82■□□□□ 0.92
SNX1-214ENST00000625244 PEAK1Q9H792 1746 aa20.81■□□□□ 0.92
SNX1-214ENST00000625244 SGIP1Q9BQI5 828 aa20.81■□□□□ 0.92
SNX1-214ENST00000625244 PARP4Q9UKK3 1724 aaKnown RBP20.8■□□□□ 0.92
SNX1-214ENST00000625244 LMO7Q8WWI1 1683 aa20.78■□□□□ 0.92
SNX1-214ENST00000625244 ATP7BP35670 1465 aa20.78■□□□□ 0.92
SNX1-214ENST00000625244 CPDO75976 1380 aa20.77■□□□□ 0.92
SNX1-214ENST00000625244 SLC15A2Q16348 729 aa20.77■□□□□ 0.92
SNX1-214ENST00000625244 MTFR1LQ9H019 292 aa20.77■□□□□ 0.92
SNX1-214ENST00000625244 STK32BQ9NY57 414 aa20.77■□□□□ 0.92
SNX1-214ENST00000625244 SBF2Q86WG5 1849 aa20.76■□□□□ 0.91
SNX1-214ENST00000625244 MPHOSPH9Q99550 1183 aa20.76■□□□□ 0.91
SNX1-214ENST00000625244 ADGRB1O14514 1584 aa20.76■□□□□ 0.91
SNX1-214ENST00000625244 NUDT16Q96DE0 195 aaKnown RBP20.75■□□□□ 0.91
SNX1-214ENST00000625244 COL5A2P05997 1499 aaPredicted RBP20.75■□□□□ 0.91
SNX1-214ENST00000625244 DDB1Q16531 1140 aa20.74■□□□□ 0.91
SNX1-214ENST00000625244 TXNRD1Q16881 649 aa20.74■□□□□ 0.91
SNX1-214ENST00000625244 ARXQ96QS3 562 aa20.74■□□□□ 0.91
SNX1-214ENST00000625244 CRB1P82279 1406 aa20.72■□□□□ 0.91
SNX1-214ENST00000625244 GPR162Q16538 588 aa20.72■□□□□ 0.91
SNX1-214ENST00000625244 ABTB2Q8N961 1025 aa20.72■□□□□ 0.91
SNX1-214ENST00000625244 MARCH10Q8NA82 808 aaPredicted RBP20.72■□□□□ 0.91
SNX1-214ENST00000625244 USP19O94966 1318 aa20.72■□□□□ 0.91
SNX1-214ENST00000625244 LRRC37A3O60309 1634 aa20.71■□□□□ 0.91
SNX1-214ENST00000625244 MAP3K5Q99683 1374 aa20.71■□□□□ 0.91
SNX1-214ENST00000625244 ACEP12821 1306 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms