RNA–Protein interactions for RNA: ENST00000591595.5

SMARCA4-217, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,377 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-217ENST00000591595 ADGRF5Q8IZF2 1346 aa15.16■□□□□ 0.02
SMARCA4-217ENST00000591595 UPF2Q9HAU5 1272 aaKnown RBP15.15■□□□□ 0.02
SMARCA4-217ENST00000591595 PDE3AQ14432 1141 aa15.15■□□□□ 0.02
SMARCA4-217ENST00000591595 ZBTB9Q96C00 473 aa15.15■□□□□ 0.02
SMARCA4-217ENST00000591595 DDX11L8A8MPP1 907 aa15.15■□□□□ 0.02
SMARCA4-217ENST00000591595 NASPP49321 788 aaPredicted RBP15.14■□□□□ 0.01
SMARCA4-217ENST00000591595 AXDND1Q5T1B0 1012 aaPredicted RBP15.14■□□□□ 0.01
SMARCA4-217ENST00000591595 ZNF622Q969S3 477 aaKnown RBP eCLIP15.14■□□□□ 0.015e-11■■□□□ 13.2
SMARCA4-217ENST00000591595 NOL7Q9UMY1 257 aaKnown RBP15.13■□□□□ 0.01
SMARCA4-217ENST00000591595 MAPK8IP3Q9UPT6 1336 aa15.13■□□□□ 0.01
SMARCA4-217ENST00000591595 NPC1L1Q9UHC9 1359 aa15.13■□□□□ 0.01
SMARCA4-217ENST00000591595 SYNMO15061 1565 aa15.12■□□□□ 0.01
SMARCA4-217ENST00000591595 ABCC2Q92887 1545 aa15.12■□□□□ 0.01
SMARCA4-217ENST00000591595 TRIM6-TRIM34B2RNG4 842 aa15.12■□□□□ 0.01
SMARCA4-217ENST00000591595 PTMSP20962 102 aa15.12■□□□□ 0.01
SMARCA4-217ENST00000591595 HS1BP3Q53T59 392 aa15.12■□□□□ 0.01
SMARCA4-217ENST00000591595 TRIM34Q9BYJ4 488 aa15.12■□□□□ 0.01
SMARCA4-217ENST00000591595 TCP11L2Q8N4U5 519 aa15.12■□□□□ 0.01
SMARCA4-217ENST00000591595 SLC12A5Q9H2X9 1139 aa15.12■□□□□ 0.01
SMARCA4-217ENST00000591595 SCAPERQ9BY12 1400 aa15.12■□□□□ 0.01
SMARCA4-217ENST00000591595 SENP3Q9H4L4 574 aaPredicted RBP15.11■□□□□ 0.01
SMARCA4-217ENST00000591595 MADDQ8WXG6 1647 aa15.11■□□□□ 0.01
SMARCA4-217ENST00000591595 SPDYE4A6NLX3 237 aa15.11■□□□□ 0.01
SMARCA4-217ENST00000591595 SEC24BO95487 1268 aa15.11■□□□□ 0.01
SMARCA4-217ENST00000591595 ZNF710Q8N1W2 664 aa15.11■□□□□ 0.01
SMARCA4-217ENST00000591595 YY1AP1Q9H869 796 aa15.11■□□□□ 0.01
SMARCA4-217ENST00000591595 GEMIN8Q9NWZ8 242 aaKnown RBP15.11■□□□□ 0.01
SMARCA4-217ENST00000591595 SPRYD3Q8NCJ5 442 aa15.1■□□□□ 0.01
SMARCA4-217ENST00000591595 RUNDC1Q96C34 613 aa15.1■□□□□ 0.01
SMARCA4-217ENST00000591595 CFAP53Q96M91 514 aa15.1■□□□□ 0.01
SMARCA4-217ENST00000591595 RNF17Q9BXT8 1623 aaKnown RBP15.1■□□□□ 0.01
SMARCA4-217ENST00000591595 PTMAP06454 111 aaKnown RBP15.1■□□□□ 0.01
SMARCA4-217ENST00000591595 PMFBP1Q8TBY8 1022 aa15.1■□□□□ 0.01
SMARCA4-217ENST00000591595 ERCC6L2Q5T890 1561 aa15.09■□□□□ 0.01
SMARCA4-217ENST00000591595 TBC1D2Q9BYX2 928 aa15.09■□□□□ 0.01
SMARCA4-217ENST00000591595 CHMP5Q9NZZ3 219 aa15.09■□□□□ 0.01
SMARCA4-217ENST00000591595 CCDC66A2RUB6 948 aa15.09■□□□□ 0.01
SMARCA4-217ENST00000591595 TIGD1Q96MW7 591 aa15.09■□□□□ 0.01
SMARCA4-217ENST00000591595 TMEM132EQ6IEE7 984 aa15.08■□□□□ 0.01
SMARCA4-217ENST00000591595 MYRIPQ8NFW9 859 aa15.08■□□□□ 0.01
SMARCA4-217ENST00000591595 U2AF1L5P0DN76 240 aaPredicted RBP15.08■□□□□ 0
SMARCA4-217ENST00000591595 MTHFSP49914 203 aa15.08■□□□□ 0
SMARCA4-217ENST00000591595 U2AF1Q01081 240 aaKnown RBP eCLIP15.08■□□□□ 0
SMARCA4-217ENST00000591595 TNNQ9UQP3 1299 aa15.08■□□□□ 0
SMARCA4-217ENST00000591595 TRPM2O94759 1503 aa15.08■□□□□ 0
SMARCA4-217ENST00000591595 RARSP54136 660 aaKnown RBP15.08■□□□□ 0
SMARCA4-217ENST00000591595 TMED8Q6PL24 325 aaPredicted RBP15.08■□□□□ 0
SMARCA4-217ENST00000591595 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.08■□□□□ 0
SMARCA4-217ENST00000591595 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.07■□□□□ 0
SMARCA4-217ENST00000591595 NSD3Q9BZ95 1437 aa15.07■□□□□ 0
SMARCA4-217ENST00000591595 TSC1Q92574 1164 aa15.07■□□□□ 0
SMARCA4-217ENST00000591595 JARID2Q92833 1246 aaPredicted RBP15.07■□□□□ 0
SMARCA4-217ENST00000591595 PTPRTO14522 1441 aa15.06■□□□□ 0
SMARCA4-217ENST00000591595 ABCC1P33527 1531 aa15.06■□□□□ 0
SMARCA4-217ENST00000591595 CAPN2P17655 700 aa15.06■□□□□ 0
SMARCA4-217ENST00000591595 NUTM2DQ5VT03 806 aaPredicted RBP15.06■□□□□ 0
SMARCA4-217ENST00000591595 ERVK-7P63135 1459 aa15.06■□□□□ 0
SMARCA4-217ENST00000591595 IQGAP1P46940 1657 aa15.06■□□□□ 0
SMARCA4-217ENST00000591595 RLBP1P12271 317 aa15.05■□□□□ 0
SMARCA4-217ENST00000591595 SAFB2Q14151 953 aaKnown RBP eCLIP15.05■□□□□ 02e-6■□□□□ 10.3
SMARCA4-217ENST00000591595 GGT6Q6P531 493 aa15.05■□□□□ 0
SMARCA4-217ENST00000591595 RWDD1Q9H446 243 aaPredicted RBP15.05■□□□□ 0
SMARCA4-217ENST00000591595 PDZRN3Q9UPQ7 1066 aa15.05■□□□□ 0
SMARCA4-217ENST00000591595 ZKSCAN5Q9Y2L8 839 aa15.05■□□□□ 0
SMARCA4-217ENST00000591595 PCDHB15Q9Y5E8 787 aa15.05■□□□□ 0
SMARCA4-217ENST00000591595 CLASP1Q7Z460 1538 aa15.05■□□□□ -0
SMARCA4-217ENST00000591595 CLTCL1P53675 1640 aa15.05■□□□□ -0
SMARCA4-217ENST00000591595 POLR3AO14802 1390 aaPredicted RBP15.05■□□□□ -0
SMARCA4-217ENST00000591595 NINLQ9Y2I6 1382 aa15.05■□□□□ -0
SMARCA4-217ENST00000591595 KIF3AQ9Y496 699 aa15.04■□□□□ -0
SMARCA4-217ENST00000591595 PRR29P0C7W0 189 aa15.04■□□□□ -0
SMARCA4-217ENST00000591595 U2SURPO15042 1029 aaKnown RBP15.04■□□□□ -0
SMARCA4-217ENST00000591595 RTEL1-TNFRSF6BF6WH68 1400 aa15.03■□□□□ -0
SMARCA4-217ENST00000591595 UGGT1Q9NYU2 1555 aa15.03■□□□□ -0
SMARCA4-217ENST00000591595 KDM5AP29375 1690 aaKnown RBP15.03■□□□□ -0
SMARCA4-217ENST00000591595 TULP2O00295 520 aa15.03■□□□□ -0
SMARCA4-217ENST00000591595 GRIPAP1Q4V328 841 aa15.03■□□□□ -0
SMARCA4-217ENST00000591595 TSPYL1Q9H0U9 437 aa15.03■□□□□ -0
SMARCA4-217ENST00000591595 MCM5P33992 734 aa15.02■□□□□ -0
SMARCA4-217ENST00000591595 VIRMAQ69YN4 1812 aaKnown RBP15.02■□□□□ -0
SMARCA4-217ENST00000591595 PDCL2Q8N4E4 241 aa15.02□□□□□ -0.01
SMARCA4-217ENST00000591595 LOC102724159A0A0B4J2E5 919 aa15.01□□□□□ -0.01
SMARCA4-217ENST00000591595 PWP2Q15269 919 aaKnown RBP15.01□□□□□ -0.01
SMARCA4-217ENST00000591595 WDR63Q8IWG1 891 aa15.01□□□□□ -0.01
SMARCA4-217ENST00000591595 CHD1O14646 1710 aa15.01□□□□□ -0.01
SMARCA4-217ENST00000591595 NOS1P29475 1434 aa15.01□□□□□ -0.01
SMARCA4-217ENST00000591595 SPHKAPQ2M3C7 1700 aa15.01□□□□□ -0.01
SMARCA4-217ENST00000591595 SMC4Q9NTJ3 1288 aa15.01□□□□□ -0.01
SMARCA4-217ENST00000591595 GABPB1Q06547 395 aaPredicted RBP15□□□□□ -0.01
SMARCA4-217ENST00000591595 SKOR2Q2VWA4 1001 aaPredicted RBP15□□□□□ -0.01
SMARCA4-217ENST00000591595 TSR2Q969E8 191 aaKnown RBP15□□□□□ -0.01
SMARCA4-217ENST00000591595 NLRP1Q9C000 1473 aa15□□□□□ -0.01
SMARCA4-217ENST00000591595 ZKSCAN2Q63HK3 967 aa15□□□□□ -0.01
SMARCA4-217ENST00000591595 FANCAO15360 1455 aa15□□□□□ -0.01
SMARCA4-217ENST00000591595 MFAP1P55081 439 aaKnown RBP14.99□□□□□ -0.01
SMARCA4-217ENST00000591595 ZFYVE16Q7Z3T8 1539 aa14.99□□□□□ -0.01
SMARCA4-217ENST00000591595 U2AF2P26368 475 aaKnown RBP eCLIP14.99□□□□□ -0.01
SMARCA4-217ENST00000591595 GTF2F1P35269 517 aaKnown RBP eCLIP14.99□□□□□ -0.01
SMARCA4-217ENST00000591595 HMGN5P82970 282 aaKnown RBP14.99□□□□□ -0.01
SMARCA4-217ENST00000591595 ITPRIPQ8IWB1 547 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms