RNA–Protein interactions for RNA: ENST00000589455.5

LINC01140-209, Transcript of long intergenic non-protein coding RNA 1140, humanhuman

TSL 2

Gene LINC01140, Length 538 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01140-209ENST00000589455 HIRIP3Q9BW71 556 aaPredicted RBP23.2■■□□□ 1.3
LINC01140-209ENST00000589455 PRDM11Q9NQV5 511 aa23.2■■□□□ 1.3
LINC01140-209ENST00000589455 TRAK1Q9UPV9 953 aa23.2■■□□□ 1.3
LINC01140-209ENST00000589455 COL14A1Q05707 1796 aaKnown RBP23.19■■□□□ 1.3
LINC01140-209ENST00000589455 FAM196AQ6ZSG2 479 aa23.18■■□□□ 1.3
LINC01140-209ENST00000589455 NRAPQ86VF7 1730 aa23.18■■□□□ 1.3
LINC01140-209ENST00000589455 MINK1Q8N4C8 1332 aaPredicted RBP23.17■■□□□ 1.3
LINC01140-209ENST00000589455 R3HDM1Q15032 1099 aaKnown RBP23.17■■□□□ 1.3
LINC01140-209ENST00000589455 FAM182BQ5T319 152 aa23.17■■□□□ 1.3
LINC01140-209ENST00000589455 ADGRB1O14514 1584 aa23.17■■□□□ 1.3
LINC01140-209ENST00000589455 SPATA31A1Q5TZJ5 1347 aa23.16■■□□□ 1.3
LINC01140-209ENST00000589455 PAK3O75914 559 aaPredicted RBP23.16■■□□□ 1.3
LINC01140-209ENST00000589455 TULP4Q9NRJ4 1543 aa23.16■■□□□ 1.3
LINC01140-209ENST00000589455 TRPM3Q9HCF6 1732 aaPredicted RBP23.16■■□□□ 1.3
LINC01140-209ENST00000589455 CAMKK2Q96RR4 588 aa23.15■■□□□ 1.3
LINC01140-209ENST00000589455 PARD3Q8TEW0 1356 aa23.14■■□□□ 1.3
LINC01140-209ENST00000589455 ALS2Q96Q42 1657 aa23.14■■□□□ 1.29
LINC01140-209ENST00000589455 EZH2Q15910 746 aaKnown RBP23.13■■□□□ 1.29
LINC01140-209ENST00000589455 RGPD1P0DJD0 1748 aa23.12■■□□□ 1.29
LINC01140-209ENST00000589455 THSD7AQ9UPZ6 1657 aa23.11■■□□□ 1.29
LINC01140-209ENST00000589455 KIAA0232Q92628 1395 aa23.11■■□□□ 1.29
LINC01140-209ENST00000589455 BARGINQ6ZT62 677 aa23.1■■□□□ 1.29
LINC01140-209ENST00000589455 TRIM37O94972 964 aa23.09■■□□□ 1.29
LINC01140-209ENST00000589455 DCAF11Q8TEB1 546 aa23.09■■□□□ 1.29
LINC01140-209ENST00000589455 NUDT16Q96DE0 195 aaKnown RBP23.09■■□□□ 1.29
LINC01140-209ENST00000589455 APBA3O96018 575 aa23.08■■□□□ 1.29
LINC01140-209ENST00000589455 CHRNA2Q15822 529 aa23.07■■□□□ 1.28
LINC01140-209ENST00000589455 STRN4Q9NRL3 753 aa23.07■■□□□ 1.28
LINC01140-209ENST00000589455 KDM2AQ9Y2K7 1162 aa23.07■■□□□ 1.28
LINC01140-209ENST00000589455 PDE3BQ13370 1112 aa23.06■■□□□ 1.28
LINC01140-209ENST00000589455 ATP7BP35670 1465 aa23.05■■□□□ 1.28
LINC01140-209ENST00000589455 EVA1CP58658 441 aa23.05■■□□□ 1.28
LINC01140-209ENST00000589455 ZC3H6P61129 1189 aaKnown RBP23.05■■□□□ 1.28
LINC01140-209ENST00000589455 NBPF8Q3BBV2 869 aa23.04■■□□□ 1.28
LINC01140-209ENST00000589455 NBPF14Q5TI25 921 aa23.04■■□□□ 1.28
LINC01140-209ENST00000589455 CCDC61Q9Y6R9 512 aa23.03■■□□□ 1.28
LINC01140-209ENST00000589455 POLR3AO14802 1390 aaPredicted RBP23.02■■□□□ 1.28
LINC01140-209ENST00000589455 C11orf95C9JLR9 678 aaPredicted RBP23.02■■□□□ 1.28
LINC01140-209ENST00000589455 CRYBG1Q9Y4K1 1723 aa23.02■■□□□ 1.28
LINC01140-209ENST00000589455 PLEKHG3A1L390 1219 aa23.01■■□□□ 1.27
LINC01140-209ENST00000589455 TCP11L2Q8N4U5 519 aa23.01■■□□□ 1.27
LINC01140-209ENST00000589455 CDK19Q9BWU1 502 aa23.01■■□□□ 1.27
LINC01140-209ENST00000589455 USP35Q9P2H5 1018 aa23.01■■□□□ 1.27
LINC01140-209ENST00000589455 THRAP3Q9Y2W1 955 aaKnown RBP23.01■■□□□ 1.27
LINC01140-209ENST00000589455 TNS1Q9HBL0 1735 aaKnown RBP23.01■■□□□ 1.27
LINC01140-209ENST00000589455 RAB3GAP2Q9H2M9 1393 aa23.01■■□□□ 1.27
LINC01140-209ENST00000589455 SSH2Q76I76 1423 aa23■■□□□ 1.27
LINC01140-209ENST00000589455 CPDO75976 1380 aa23■■□□□ 1.27
LINC01140-209ENST00000589455 ACEP12821 1306 aa22.99■■□□□ 1.27
LINC01140-209ENST00000589455 NUTM2GQ5VZR2 741 aa22.98■■□□□ 1.27
LINC01140-209ENST00000589455 ABTB2Q8N961 1025 aa22.98■■□□□ 1.27
LINC01140-209ENST00000589455 LARP1Q6PKG0 1096 aaKnown RBP22.97■■□□□ 1.27
LINC01140-209ENST00000589455 USP19O94966 1318 aa22.95■■□□□ 1.26
LINC01140-209ENST00000589455 NLRP13Q86W25 1043 aa22.94■■□□□ 1.26
LINC01140-209ENST00000589455 SPON1Q9HCB6 807 aa22.93■■□□□ 1.26
LINC01140-209ENST00000589455 CAMTA1Q9Y6Y1 1673 aa22.93■■□□□ 1.26
LINC01140-209ENST00000589455 ITSN1Q15811 1721 aa22.92■■□□□ 1.26
LINC01140-209ENST00000589455 GCP02774 474 aa22.92■■□□□ 1.26
LINC01140-209ENST00000589455 YY1P25490 414 aa22.92■■□□□ 1.26
LINC01140-209ENST00000589455 BRD4O60885 1362 aaPredicted RBP22.91■■□□□ 1.26
LINC01140-209ENST00000589455 PHRF1Q9P1Y6 1649 aaKnown RBP22.91■■□□□ 1.26
LINC01140-209ENST00000589455 DCAF8L1A6NGE4 600 aa22.9■■□□□ 1.26
LINC01140-209ENST00000589455 KCNQ2O43526 872 aa22.9■■□□□ 1.26
LINC01140-209ENST00000589455 PPP1R1BQ9UD71 204 aaPredicted RBP22.89■■□□□ 1.25
LINC01140-209ENST00000589455 PLSCR1O15162 318 aa22.88■■□□□ 1.25
LINC01140-209ENST00000589455 ARHGEF28Q8N1W1 1705 aaKnown RBP22.87■■□□□ 1.25
LINC01140-209ENST00000589455 NINLQ9Y2I6 1382 aa22.87■■□□□ 1.25
LINC01140-209ENST00000589455 NRKQ7Z2Y5 1582 aa22.86■■□□□ 1.25
LINC01140-209ENST00000589455 RREB1Q92766 1687 aa22.86■■□□□ 1.25
LINC01140-209ENST00000589455 CRB1P82279 1406 aa22.85■■□□□ 1.25
LINC01140-209ENST00000589455 COL5A2P05997 1499 aaPredicted RBP22.85■■□□□ 1.25
LINC01140-209ENST00000589455 LMO7Q8WWI1 1683 aa22.84■■□□□ 1.25
LINC01140-209ENST00000589455 OVOS2A0A0G2JMS6 1433 aa22.84■■□□□ 1.25
LINC01140-209ENST00000589455 OVOS2A0A0J9YW53 1432 aa22.84■■□□□ 1.25
LINC01140-209ENST00000589455 OVOS2Q6IE36 1432 aa22.84■■□□□ 1.25
LINC01140-209ENST00000589455 SRPK2P78362 688 aaKnown RBP22.83■■□□□ 1.25
LINC01140-209ENST00000589455 AATKQ6ZMQ8 1374 aa22.83■■□□□ 1.25
LINC01140-209ENST00000589455 TOPAZ1Q8N9V7 1692 aa22.82■■□□□ 1.24
LINC01140-209ENST00000589455 BCL11BQ9C0K0 894 aaPredicted RBP22.82■■□□□ 1.24
LINC01140-209ENST00000589455 NUP188Q5SRE5 1749 aa22.82■■□□□ 1.24
LINC01140-209ENST00000589455 PPIP5K1Q6PFW1 1433 aa22.82■■□□□ 1.24
LINC01140-209ENST00000589455 DDB1Q16531 1140 aa22.81■■□□□ 1.24
LINC01140-209ENST00000589455 CDCA7Q9BWT1 371 aaPredicted RBP22.8■■□□□ 1.24
LINC01140-209ENST00000589455 NLRP6P59044 892 aa22.79■■□□□ 1.24
LINC01140-209ENST00000589455 CENPJQ9HC77 1338 aaPredicted RBP22.79■■□□□ 1.24
LINC01140-209ENST00000589455 NBPF1Q3BBV0 1214 aa22.78■■□□□ 1.24
LINC01140-209ENST00000589455 CABP2Q9NPB3 220 aa22.78■■□□□ 1.24
LINC01140-209ENST00000589455 PARP4Q9UKK3 1724 aaKnown RBP22.78■■□□□ 1.24
LINC01140-209ENST00000589455 BCL9O00512 1426 aa22.77■■□□□ 1.24
LINC01140-209ENST00000589455 TOM1L2Q6ZVM7 507 aa22.77■■□□□ 1.24
LINC01140-209ENST00000589455 CABP1Q9NZU7 370 aa22.76■■□□□ 1.23
LINC01140-209ENST00000589455 USP6P35125 1406 aa22.74■■□□□ 1.23
LINC01140-209ENST00000589455 KIAA1210Q9ULL0 1709 aa22.74■■□□□ 1.23
LINC01140-209ENST00000589455 WDR17Q8IZU2 1322 aa22.74■■□□□ 1.23
LINC01140-209ENST00000589455 PROM2Q8N271 834 aa22.73■■□□□ 1.23
LINC01140-209ENST00000589455 ANO8Q9HCE9 1232 aaPredicted RBP22.73■■□□□ 1.23
LINC01140-209ENST00000589455 ZBTB7CA1YPR0 619 aa22.72■■□□□ 1.23
LINC01140-209ENST00000589455 MARCH10Q8NA82 808 aaPredicted RBP22.72■■□□□ 1.23
LINC01140-209ENST00000589455 SLIT3O75094 1523 aa22.72■■□□□ 1.23
LINC01140-209ENST00000589455 PEAK1Q9H792 1746 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms