RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-215ENST00000578317 ST20-MTHFSA0A0A6YYL1 179 aa11.23□□□□□ -0.61
COPS3-215ENST00000578317 ATN1P54259 1190 aaPredicted RBP11.23□□□□□ -0.61
COPS3-215ENST00000578317 NLRP6P59044 892 aa11.23□□□□□ -0.61
COPS3-215ENST00000578317 ZNF316A6NFI3 1004 aaPredicted RBP11.22□□□□□ -0.61
COPS3-215ENST00000578317 CADPS2Q86UW7 1296 aa11.22□□□□□ -0.61
COPS3-215ENST00000578317 TRAK1Q9UPV9 953 aa11.22□□□□□ -0.61
COPS3-215ENST00000578317 YTHDC2Q9H6S0 1430 aaKnown RBP11.22□□□□□ -0.61
COPS3-215ENST00000578317 LAMC1P11047 1609 aa11.22□□□□□ -0.61
COPS3-215ENST00000578317 ATMINO43313 823 aaPredicted RBP11.21□□□□□ -0.61
COPS3-215ENST00000578317 ASTLQ6HA08 431 aaPredicted RBP11.21□□□□□ -0.61
COPS3-215ENST00000578317 EIF3AQ14152 1382 aaKnown RBP11.21□□□□□ -0.61
COPS3-215ENST00000578317 POLR1AO95602 1720 aaPredicted RBP11.21□□□□□ -0.61
COPS3-215ENST00000578317 ILDR1Q86SU0 546 aaPredicted RBP11.2□□□□□ -0.62
COPS3-215ENST00000578317 KCNV2Q8TDN2 545 aa11.2□□□□□ -0.62
COPS3-215ENST00000578317 TESK2Q96S53 571 aa11.2□□□□□ -0.62
COPS3-215ENST00000578317 STK26Q9P289 416 aa11.2□□□□□ -0.62
COPS3-215ENST00000578317 AMOTL2Q9Y2J4 779 aa11.2□□□□□ -0.62
COPS3-215ENST00000578317 NRXN3Q9Y4C0 1643 aa11.2□□□□□ -0.62
COPS3-215ENST00000578317 DIP2AQ14689 1571 aa11.2□□□□□ -0.62
COPS3-215ENST00000578317 TECPR2O15040 1411 aa11.2□□□□□ -0.62
COPS3-215ENST00000578317 KCNA6P17658 529 aa11.2□□□□□ -0.62
COPS3-215ENST00000578317 GOLGA2Q08379 1002 aa11.2□□□□□ -0.62
COPS3-215ENST00000578317 FAM135BQ49AJ0 1406 aa11.19□□□□□ -0.62
COPS3-215ENST00000578317 SBNO2Q9Y2G9 1366 aa11.19□□□□□ -0.62
COPS3-215ENST00000578317 CENPJQ9HC77 1338 aaPredicted RBP11.19□□□□□ -0.62
COPS3-215ENST00000578317 ASXL1Q8IXJ9 1541 aa11.18□□□□□ -0.62
COPS3-215ENST00000578317 MKRN3Q13064 507 aaKnown RBP11.18□□□□□ -0.62
COPS3-215ENST00000578317 PTPRUQ92729 1446 aa11.18□□□□□ -0.62
COPS3-215ENST00000578317 PRAM1Q96QH2 718 aa11.17□□□□□ -0.62
COPS3-215ENST00000578317 HIRIP3Q9BW71 556 aaPredicted RBP11.17□□□□□ -0.62
COPS3-215ENST00000578317 DLC1Q96QB1 1528 aa11.17□□□□□ -0.62
COPS3-215ENST00000578317 PUS7Q96PZ0 661 aaKnown RBP11.17□□□□□ -0.62
COPS3-215ENST00000578317 POGKQ9P215 609 aa11.17□□□□□ -0.62
COPS3-215ENST00000578317 IQGAP1P46940 1657 aa11.16□□□□□ -0.62
COPS3-215ENST00000578317 TMF1P82094 1093 aa11.16□□□□□ -0.62
COPS3-215ENST00000578317 C11orf95C9JLR9 678 aaPredicted RBP11.15□□□□□ -0.62
COPS3-215ENST00000578317 CDCA8Q53HL2 280 aa11.15□□□□□ -0.62
COPS3-215ENST00000578317 WAPLQ7Z5K2 1190 aa11.15□□□□□ -0.62
COPS3-215ENST00000578317 PTCH1Q13635 1447 aa11.15□□□□□ -0.62
COPS3-215ENST00000578317 SETD1AO15047 1707 aaKnown RBP11.15□□□□□ -0.63
COPS3-215ENST00000578317 ROBO2Q9HCK4 1378 aa11.15□□□□□ -0.63
COPS3-215ENST00000578317 PELP1Q8IZL8 1130 aaKnown RBP11.13□□□□□ -0.63
COPS3-215ENST00000578317 SP7Q8TDD2 431 aaPredicted RBP11.13□□□□□ -0.63
COPS3-215ENST00000578317 WASHC2AQ641Q2 1341 aa11.13□□□□□ -0.63
COPS3-215ENST00000578317 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.13□□□□□ -0.63
COPS3-215ENST00000578317 PLEKHH1Q9ULM0 1364 aa11.12□□□□□ -0.63
COPS3-215ENST00000578317 EVC2Q86UK5 1308 aa11.11□□□□□ -0.63
COPS3-215ENST00000578317 NCOA3Q9Y6Q9 1424 aa11.11□□□□□ -0.63
COPS3-215ENST00000578317 POTEIP0CG38 1075 aa11.11□□□□□ -0.63
COPS3-215ENST00000578317 IRX5P78411 483 aaPredicted RBP11.11□□□□□ -0.63
COPS3-215ENST00000578317 LMOD2Q6P5Q4 547 aa11.11□□□□□ -0.63
COPS3-215ENST00000578317 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.11□□□□□ -0.63
COPS3-215ENST00000578317 PDCD7Q8N8D1 485 aaKnown RBP11.11□□□□□ -0.63
COPS3-215ENST00000578317 CCDC7Q96M83 1385 aa11.11□□□□□ -0.63
COPS3-215ENST00000578317 KIF7Q2M1P5 1343 aa11.11□□□□□ -0.63
COPS3-215ENST00000578317 CPS1P31327 1500 aa11.11□□□□□ -0.63
COPS3-215ENST00000578317 TULP1O00294 542 aaPredicted RBP11.1□□□□□ -0.63
COPS3-215ENST00000578317 SAFB2Q14151 953 aaKnown RBP eCLIP11.1□□□□□ -0.63
COPS3-215ENST00000578317 WASLO00401 505 aaPredicted RBP11.09□□□□□ -0.63
COPS3-215ENST00000578317 DPY19L2Q6NUT2 758 aa11.09□□□□□ -0.63
COPS3-215ENST00000578317 PROSER2Q86WR7 435 aaPredicted RBP11.09□□□□□ -0.63
COPS3-215ENST00000578317 MINK1Q8N4C8 1332 aaPredicted RBP11.09□□□□□ -0.63
COPS3-215ENST00000578317 NKTRP30414 1462 aaKnown RBP11.09□□□□□ -0.63
COPS3-215ENST00000578317 DISP3Q9P2K9 1392 aa11.09□□□□□ -0.63
COPS3-215ENST00000578317 CDK19Q9BWU1 502 aa11.09□□□□□ -0.63
COPS3-215ENST00000578317 STRCP1A6NGW2 1772 aa11.09□□□□□ -0.63
COPS3-215ENST00000578317 IER5LQ5T953 404 aa11.08□□□□□ -0.64
COPS3-215ENST00000578317 ARHGEF1Q92888 912 aaKnown RBP11.08□□□□□ -0.64
COPS3-215ENST00000578317 C19orf44Q9H6X5 657 aa11.08□□□□□ -0.64
COPS3-215ENST00000578317 NWD1Q149M9 1564 aa11.08□□□□□ -0.64
COPS3-215ENST00000578317 KNDC1Q76NI1 1749 aa11.08□□□□□ -0.64
COPS3-215ENST00000578317 XRN1Q8IZH2 1706 aaKnown RBP11.08□□□□□ -0.64
COPS3-215ENST00000578317 ZNF335Q9H4Z2 1342 aaPredicted RBP11.08□□□□□ -0.64
COPS3-215ENST00000578317 DCBLD2Q96PD2 775 aa11.07□□□□□ -0.64
COPS3-215ENST00000578317 LTBP4Q8N2S1 1624 aa11.07□□□□□ -0.64
COPS3-215ENST00000578317 GTF3C3Q9Y5Q9 886 aa11.06□□□□□ -0.64
COPS3-215ENST00000578317 CHD2O14647 1828 aaKnown RBP11.06□□□□□ -0.64
COPS3-215ENST00000578317 ARHGEF28Q8N1W1 1705 aaKnown RBP11.06□□□□□ -0.64
COPS3-215ENST00000578317 TMEM132AQ24JP5 1023 aa11.06□□□□□ -0.64
COPS3-215ENST00000578317 TMEM94Q12767 1356 aa11.05□□□□□ -0.64
COPS3-215ENST00000578317 ATAD2Q6PL18 1390 aa11.05□□□□□ -0.64
COPS3-215ENST00000578317 SRPK2P78362 688 aaKnown RBP11.05□□□□□ -0.64
COPS3-215ENST00000578317 DDX10Q13206 875 aaKnown RBP11.05□□□□□ -0.64
COPS3-215ENST00000578317 E2F4Q16254 413 aa11.05□□□□□ -0.64
COPS3-215ENST00000578317 NINLQ9Y2I6 1382 aa11.04□□□□□ -0.64
COPS3-215ENST00000578317 ADGRL3Q9HAR2 1447 aa11.04□□□□□ -0.64
COPS3-215ENST00000578317 NUDT16Q96DE0 195 aaKnown RBP11.03□□□□□ -0.64
COPS3-215ENST00000578317 RBM33Q96EV2 1170 aaKnown RBP11.03□□□□□ -0.64
COPS3-215ENST00000578317 TULP4Q9NRJ4 1543 aa11.03□□□□□ -0.64
COPS3-215ENST00000578317 POTEFA5A3E0 1075 aa11.02□□□□□ -0.64
COPS3-215ENST00000578317 POLR3GLQ9BT43 218 aa11.02□□□□□ -0.64
COPS3-215ENST00000578317 OCEL1Q9H607 264 aa11.02□□□□□ -0.64
COPS3-215ENST00000578317 COLQQ9Y215 455 aaPredicted RBP11.02□□□□□ -0.64
COPS3-215ENST00000578317 PLEKHG3A1L390 1219 aa11.02□□□□□ -0.65
COPS3-215ENST00000578317 PER1O15534 1290 aaPredicted RBP11.02□□□□□ -0.65
COPS3-215ENST00000578317 C14orf37Q86TY3 774 aa11.02□□□□□ -0.65
COPS3-215ENST00000578317 SLC12A5Q9H2X9 1139 aa11.02□□□□□ -0.65
COPS3-215ENST00000578317 DCCP43146 1447 aa11.01□□□□□ -0.65
COPS3-215ENST00000578317 LRRC7Q96NW7 1537 aa11.01□□□□□ -0.65
COPS3-215ENST00000578317 ADGRB2O60241 1585 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms