RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 GOLGB1Q14789 3259 aaKnown RBP20.75■□□□□ 0.91
CIITA-211ENST00000576601 SLC4A1APQ9BWU0 796 aaKnown RBP20.74■□□□□ 0.91
CIITA-211ENST00000576601 PARD3Q8TEW0 1356 aa20.73■□□□□ 0.91
CIITA-211ENST00000576601 SIRT1Q96EB6 747 aa20.73■□□□□ 0.91
CIITA-211ENST00000576601 DLC1Q96QB1 1528 aa20.73■□□□□ 0.91
CIITA-211ENST00000576601 RGPD3A6NKT7 1758 aaPredicted RBP20.71■□□□□ 0.91
CIITA-211ENST00000576601 RGPD4Q7Z3J3 1758 aa20.71■□□□□ 0.91
CIITA-211ENST00000576601 CASZ1Q86V15 1759 aa20.71■□□□□ 0.91
CIITA-211ENST00000576601 TRIM37O94972 964 aa20.7■□□□□ 0.9
CIITA-211ENST00000576601 RGL3Q3MIN7 710 aa20.7■□□□□ 0.9
CIITA-211ENST00000576601 PMFBP1Q8TBY8 1022 aa20.7■□□□□ 0.9
CIITA-211ENST00000576601 SBF2Q86WG5 1849 aa20.69■□□□□ 0.9
CIITA-211ENST00000576601 ITSN1Q15811 1721 aa20.68■□□□□ 0.9
CIITA-211ENST00000576601 SPATA31A1Q5TZJ5 1347 aa20.68■□□□□ 0.9
CIITA-211ENST00000576601 TULP4Q9NRJ4 1543 aa20.67■□□□□ 0.9
CIITA-211ENST00000576601 ADGRB1O14514 1584 aa20.67■□□□□ 0.9
CIITA-211ENST00000576601 PARP4Q9UKK3 1724 aaKnown RBP20.66■□□□□ 0.9
CIITA-211ENST00000576601 CHD4Q14839 1912 aa20.65■□□□□ 0.9
CIITA-211ENST00000576601 PEAK1Q9H792 1746 aa20.65■□□□□ 0.9
CIITA-211ENST00000576601 LMO7Q8WWI1 1683 aa20.65■□□□□ 0.9
CIITA-211ENST00000576601 NINLQ9Y2I6 1382 aa20.65■□□□□ 0.9
CIITA-211ENST00000576601 PRR36Q9H6K5 1346 aa20.65■□□□□ 0.9
CIITA-211ENST00000576601 ACIN1Q9UKV3 1341 aaKnown RBP20.65■□□□□ 0.9
CIITA-211ENST00000576601 SAFB2Q14151 953 aaKnown RBP eCLIP20.65■□□□□ 0.9
CIITA-211ENST00000576601 PRAM1Q96QH2 718 aa20.65■□□□□ 0.9
CIITA-211ENST00000576601 C14orf93Q9H972 538 aaKnown RBP20.65■□□□□ 0.9
CIITA-211ENST00000576601 FAM196AQ6ZSG2 479 aa20.64■□□□□ 0.89
CIITA-211ENST00000576601 NRKQ7Z2Y5 1582 aa20.63■□□□□ 0.89
CIITA-211ENST00000576601 APBA3O96018 575 aa20.63■□□□□ 0.89
CIITA-211ENST00000576601 MYOM1P52179 1685 aa20.63■□□□□ 0.89
CIITA-211ENST00000576601 KIAA0232Q92628 1395 aa20.62■□□□□ 0.89
CIITA-211ENST00000576601 DHX57Q6P158 1386 aaKnown RBP20.61■□□□□ 0.89
CIITA-211ENST00000576601 CFAP70Q5T0N1 1121 aa20.61■□□□□ 0.89
CIITA-211ENST00000576601 PRDM11Q9NQV5 511 aa20.61■□□□□ 0.89
CIITA-211ENST00000576601 GPRASP1Q5JY77 1395 aa20.6■□□□□ 0.89
CIITA-211ENST00000576601 TOPAZ1Q8N9V7 1692 aa20.6■□□□□ 0.89
CIITA-211ENST00000576601 ARHGEF28Q8N1W1 1705 aaKnown RBP20.58■□□□□ 0.89
CIITA-211ENST00000576601 WNK3Q9BYP7 1800 aa20.58■□□□□ 0.89
CIITA-211ENST00000576601 SSH2Q76I76 1423 aa20.58■□□□□ 0.88
CIITA-211ENST00000576601 ATP7BP35670 1465 aa20.57■□□□□ 0.88
CIITA-211ENST00000576601 LRRC37A3O60309 1634 aa20.56■□□□□ 0.88
CIITA-211ENST00000576601 CHRNA2Q15822 529 aa20.56■□□□□ 0.88
CIITA-211ENST00000576601 SPON1Q9HCB6 807 aa20.56■□□□□ 0.88
CIITA-211ENST00000576601 KCNQ2O43526 872 aa20.55■□□□□ 0.88
CIITA-211ENST00000576601 HIRIP3Q9BW71 556 aaPredicted RBP20.55■□□□□ 0.88
CIITA-211ENST00000576601 BARGINQ6ZT62 677 aa20.54■□□□□ 0.88
CIITA-211ENST00000576601 STRN4Q9NRL3 753 aa20.54■□□□□ 0.88
CIITA-211ENST00000576601 PPP1R1BQ9UD71 204 aaPredicted RBP20.54■□□□□ 0.88
CIITA-211ENST00000576601 EIF3AQ14152 1382 aaKnown RBP20.54■□□□□ 0.88
CIITA-211ENST00000576601 NBPF8Q3BBV2 869 aa20.52■□□□□ 0.88
CIITA-211ENST00000576601 NBPF14Q5TI25 921 aa20.52■□□□□ 0.88
CIITA-211ENST00000576601 POGKQ9P215 609 aa20.51■□□□□ 0.87
CIITA-211ENST00000576601 USP35Q9P2H5 1018 aa20.51■□□□□ 0.87
CIITA-211ENST00000576601 AKAP12Q02952 1782 aa20.51■□□□□ 0.87
CIITA-211ENST00000576601 MINK1Q8N4C8 1332 aaPredicted RBP20.51■□□□□ 0.87
CIITA-211ENST00000576601 ZNF784Q8NCA9 323 aaPredicted RBP20.5■□□□□ 0.87
CIITA-211ENST00000576601 MPHOSPH9Q99550 1183 aa20.5■□□□□ 0.87
CIITA-211ENST00000576601 ANO8Q9HCE9 1232 aaPredicted RBP20.5■□□□□ 0.87
CIITA-211ENST00000576601 PAK3O75914 559 aaPredicted RBP20.49■□□□□ 0.87
CIITA-211ENST00000576601 ZC3H6P61129 1189 aaKnown RBP20.48■□□□□ 0.87
CIITA-211ENST00000576601 PDE3BQ13370 1112 aa20.48■□□□□ 0.87
CIITA-211ENST00000576601 WASLO00401 505 aaPredicted RBP20.47■□□□□ 0.87
CIITA-211ENST00000576601 LARP1Q6PKG0 1096 aaKnown RBP20.47■□□□□ 0.87
CIITA-211ENST00000576601 PDGFDQ9GZP0 370 aaPredicted RBP20.47■□□□□ 0.87
CIITA-211ENST00000576601 COL5A2P05997 1499 aaPredicted RBP20.46■□□□□ 0.87
CIITA-211ENST00000576601 NGDNQ8NEJ9 315 aaKnown RBP20.46■□□□□ 0.87
CIITA-211ENST00000576601 TRAK1Q9UPV9 953 aa20.45■□□□□ 0.86
CIITA-211ENST00000576601 CPDO75976 1380 aa20.45■□□□□ 0.86
CIITA-211ENST00000576601 OVOS2A0A0G2JMS6 1433 aa20.44■□□□□ 0.86
CIITA-211ENST00000576601 OVOS2A0A0J9YW53 1432 aa20.44■□□□□ 0.86
CIITA-211ENST00000576601 OVOS2Q6IE36 1432 aa20.44■□□□□ 0.86
CIITA-211ENST00000576601 TCP11L2Q8N4U5 519 aa20.44■□□□□ 0.86
CIITA-211ENST00000576601 DCAF8L1A6NGE4 600 aa20.43■□□□□ 0.86
CIITA-211ENST00000576601 PTGER2P43116 358 aa20.43■□□□□ 0.86
CIITA-211ENST00000576601 POLR3AO14802 1390 aaPredicted RBP20.43■□□□□ 0.86
CIITA-211ENST00000576601 COL18A1P39060 1754 aa20.42■□□□□ 0.86
CIITA-211ENST00000576601 NUTM2GQ5VZR2 741 aa20.42■□□□□ 0.86
CIITA-211ENST00000576601 USP19O94966 1318 aa20.42■□□□□ 0.86
CIITA-211ENST00000576601 PTF1AQ7RTS3 328 aa20.4■□□□□ 0.86
CIITA-211ENST00000576601 RGPD5Q99666 1765 aa20.4■□□□□ 0.86
CIITA-211ENST00000576601 SENP3-EIF4A1A0A087X0R7 540 aa20.39■□□□□ 0.85
CIITA-211ENST00000576601 THRAP3Q9Y2W1 955 aaKnown RBP20.39■□□□□ 0.85
CIITA-211ENST00000576601 RAB3GAP2Q9H2M9 1393 aa20.38■□□□□ 0.85
CIITA-211ENST00000576601 PLSCR1O15162 318 aa20.38■□□□□ 0.85
CIITA-211ENST00000576601 EVA1CP58658 441 aa20.38■□□□□ 0.85
CIITA-211ENST00000576601 CRB1P82279 1406 aa20.37■□□□□ 0.85
CIITA-211ENST00000576601 ZBTB7AO95365 584 aa20.37■□□□□ 0.85
CIITA-211ENST00000576601 PROM2Q8N271 834 aa20.37■□□□□ 0.85
CIITA-211ENST00000576601 NUDT16Q96DE0 195 aaKnown RBP20.37■□□□□ 0.85
CIITA-211ENST00000576601 PAPPAQ13219 1627 aa20.37■□□□□ 0.85
CIITA-211ENST00000576601 C1QTNF8P60827 252 aa20.35■□□□□ 0.85
CIITA-211ENST00000576601 IFFO2Q5TF58 517 aa20.34■□□□□ 0.85
CIITA-211ENST00000576601 BCL9O00512 1426 aa20.34■□□□□ 0.85
CIITA-211ENST00000576601 SLIT3O75094 1523 aa20.33■□□□□ 0.85
CIITA-211ENST00000576601 ACEP12821 1306 aa20.33■□□□□ 0.85
CIITA-211ENST00000576601 C11orf95C9JLR9 678 aaPredicted RBP20.33■□□□□ 0.85
CIITA-211ENST00000576601 SGIP1Q9BQI5 828 aa20.33■□□□□ 0.85
CIITA-211ENST00000576601 FHDC1Q9C0D6 1143 aaPredicted RBP20.33■□□□□ 0.85
CIITA-211ENST00000576601 PIK3C2AO00443 1686 aa20.32■□□□□ 0.84
CIITA-211ENST00000576601 NHSQ6T4R5 1651 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms