RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 NRAPQ86VF7 1730 aa19.24■□□□□ 0.67
CCDC40-205ENST00000571028 DCAF8L1A6NGE4 600 aa19.23■□□□□ 0.67
CCDC40-205ENST00000571028 PRDM11Q9NQV5 511 aa19.23■□□□□ 0.67
CCDC40-205ENST00000571028 ANKARQ7Z5J8 1434 aa19.23■□□□□ 0.67
CCDC40-205ENST00000571028 COL14A1Q05707 1796 aaKnown RBP19.22■□□□□ 0.67
CCDC40-205ENST00000571028 TRIM37O94972 964 aa19.22■□□□□ 0.67
CCDC40-205ENST00000571028 FAM196AQ6ZSG2 479 aa19.22■□□□□ 0.67
CCDC40-205ENST00000571028 CCER1Q8TC90 406 aaPredicted RBP19.21■□□□□ 0.67
CCDC40-205ENST00000571028 C14orf93Q9H972 538 aaKnown RBP19.21■□□□□ 0.67
CCDC40-205ENST00000571028 PARD3Q8TEW0 1356 aa19.2■□□□□ 0.66
CCDC40-205ENST00000571028 RGPD8O14715 1765 aaPredicted RBP19.2■□□□□ 0.66
CCDC40-205ENST00000571028 PAK3O75914 559 aaPredicted RBP19.2■□□□□ 0.66
CCDC40-205ENST00000571028 APBA3O96018 575 aa19.2■□□□□ 0.66
CCDC40-205ENST00000571028 PPP1R1BQ9UD71 204 aaPredicted RBP19.2■□□□□ 0.66
CCDC40-205ENST00000571028 KDM2AQ9Y2K7 1162 aa19.2■□□□□ 0.66
CCDC40-205ENST00000571028 CAMKK2Q96RR4 588 aa19.19■□□□□ 0.66
CCDC40-205ENST00000571028 EIF3AQ14152 1382 aaKnown RBP19.19■□□□□ 0.66
CCDC40-205ENST00000571028 NBPF8Q3BBV2 869 aa19.18■□□□□ 0.66
CCDC40-205ENST00000571028 CFAP70Q5T0N1 1121 aa19.18■□□□□ 0.66
CCDC40-205ENST00000571028 NBPF14Q5TI25 921 aa19.18■□□□□ 0.66
CCDC40-205ENST00000571028 TNS1Q9HBL0 1735 aaKnown RBP19.17■□□□□ 0.66
CCDC40-205ENST00000571028 NGDNQ8NEJ9 315 aaKnown RBP19.17■□□□□ 0.66
CCDC40-205ENST00000571028 DCAF11Q8TEB1 546 aa19.17■□□□□ 0.66
CCDC40-205ENST00000571028 THSD7AQ9UPZ6 1657 aa19.17■□□□□ 0.66
CCDC40-205ENST00000571028 STRN4Q9NRL3 753 aa19.16■□□□□ 0.66
CCDC40-205ENST00000571028 PDE3BQ13370 1112 aa19.15■□□□□ 0.66
CCDC40-205ENST00000571028 HIRIP3Q9BW71 556 aaPredicted RBP19.15■□□□□ 0.66
CCDC40-205ENST00000571028 SPATA31A1Q5TZJ5 1347 aa19.15■□□□□ 0.66
CCDC40-205ENST00000571028 USP35Q9P2H5 1018 aa19.14■□□□□ 0.65
CCDC40-205ENST00000571028 TRPM3Q9HCF6 1732 aaPredicted RBP19.13■□□□□ 0.65
CCDC40-205ENST00000571028 MINK1Q8N4C8 1332 aaPredicted RBP19.12■□□□□ 0.65
CCDC40-205ENST00000571028 SPON1Q9HCB6 807 aa19.12■□□□□ 0.65
CCDC40-205ENST00000571028 ALS2Q96Q42 1657 aa19.11■□□□□ 0.65
CCDC40-205ENST00000571028 DLC1Q96QB1 1528 aa19.11■□□□□ 0.65
CCDC40-205ENST00000571028 KIAA0232Q92628 1395 aa19.11■□□□□ 0.65
CCDC40-205ENST00000571028 EVA1CP58658 441 aa19.11■□□□□ 0.65
CCDC40-205ENST00000571028 CHRNA2Q15822 529 aa19.11■□□□□ 0.65
CCDC40-205ENST00000571028 TRAK1Q9UPV9 953 aa19.1■□□□□ 0.65
CCDC40-205ENST00000571028 L3MBTL2Q969R5 705 aa19.09■□□□□ 0.65
CCDC40-205ENST00000571028 TULP4Q9NRJ4 1543 aa19.09■□□□□ 0.65
CCDC40-205ENST00000571028 PRR36Q9H6K5 1346 aa19.08■□□□□ 0.65
CCDC40-205ENST00000571028 NINLQ9Y2I6 1382 aa19.07■□□□□ 0.64
CCDC40-205ENST00000571028 WASLO00401 505 aaPredicted RBP19.07■□□□□ 0.64
CCDC40-205ENST00000571028 KCNQ2O43526 872 aa19.07■□□□□ 0.64
CCDC40-205ENST00000571028 ZC3H6P61129 1189 aaKnown RBP19.07■□□□□ 0.64
CCDC40-205ENST00000571028 TONSLQ96HA7 1378 aa19.06■□□□□ 0.64
CCDC40-205ENST00000571028 BARGINQ6ZT62 677 aa19.06■□□□□ 0.64
CCDC40-205ENST00000571028 NUTM2GQ5VZR2 741 aa19.04■□□□□ 0.64
CCDC40-205ENST00000571028 RREB1Q92766 1687 aa19.04■□□□□ 0.64
CCDC40-205ENST00000571028 SSH2Q76I76 1423 aa19.03■□□□□ 0.64
CCDC40-205ENST00000571028 TCP11L2Q8N4U5 519 aa19.03■□□□□ 0.64
CCDC40-205ENST00000571028 ATP7BP35670 1465 aa19.03■□□□□ 0.64
CCDC40-205ENST00000571028 NUP188Q5SRE5 1749 aa19.03■□□□□ 0.64
CCDC40-205ENST00000571028 CRYBG1Q9Y4K1 1723 aa19.03■□□□□ 0.64
CCDC40-205ENST00000571028 C11orf95C9JLR9 678 aaPredicted RBP19.02■□□□□ 0.64
CCDC40-205ENST00000571028 CLSPNQ9HAW4 1339 aa19■□□□□ 0.63
CCDC40-205ENST00000571028 LARP1Q6PKG0 1096 aaKnown RBP19■□□□□ 0.63
CCDC40-205ENST00000571028 ADGRB1O14514 1584 aa18.99■□□□□ 0.63
CCDC40-205ENST00000571028 NUDT16Q96DE0 195 aaKnown RBP18.99■□□□□ 0.63
CCDC40-205ENST00000571028 STAC3Q96MF2 364 aa18.99■□□□□ 0.63
CCDC40-205ENST00000571028 THRAP3Q9Y2W1 955 aaKnown RBP18.99■□□□□ 0.63
CCDC40-205ENST00000571028 PHRF1Q9P1Y6 1649 aaKnown RBP18.99■□□□□ 0.63
CCDC40-205ENST00000571028 ABTB2Q8N961 1025 aa18.96■□□□□ 0.63
CCDC40-205ENST00000571028 ITSN1Q15811 1721 aa18.95■□□□□ 0.62
CCDC40-205ENST00000571028 OVOS2A0A0G2JMS6 1433 aa18.95■□□□□ 0.62
CCDC40-205ENST00000571028 OVOS2A0A0J9YW53 1432 aa18.95■□□□□ 0.62
CCDC40-205ENST00000571028 OVOS2Q6IE36 1432 aa18.95■□□□□ 0.62
CCDC40-205ENST00000571028 CAMTA1Q9Y6Y1 1673 aa18.93■□□□□ 0.62
CCDC40-205ENST00000571028 BCL11BQ9C0K0 894 aaPredicted RBP18.93■□□□□ 0.62
CCDC40-205ENST00000571028 ACEP12821 1306 aa18.93■□□□□ 0.62
CCDC40-205ENST00000571028 CPDO75976 1380 aa18.93■□□□□ 0.62
CCDC40-205ENST00000571028 ZBTB7CA1YPR0 619 aa18.92■□□□□ 0.62
CCDC40-205ENST00000571028 NBPF1Q3BBV0 1214 aa18.92■□□□□ 0.62
CCDC40-205ENST00000571028 ZNF784Q8NCA9 323 aaPredicted RBP18.92■□□□□ 0.62
CCDC40-205ENST00000571028 NRKQ7Z2Y5 1582 aa18.92■□□□□ 0.62
CCDC40-205ENST00000571028 SENP3-EIF4A1A0A087X0R7 540 aa18.91■□□□□ 0.62
CCDC40-205ENST00000571028 PLSCR1O15162 318 aa18.91■□□□□ 0.62
CCDC40-205ENST00000571028 ZBTB7AO95365 584 aa18.91■□□□□ 0.62
CCDC40-205ENST00000571028 CDK19Q9BWU1 502 aa18.91■□□□□ 0.62
CCDC40-205ENST00000571028 POLR3AO14802 1390 aaPredicted RBP18.91■□□□□ 0.62
CCDC40-205ENST00000571028 NLRP13Q86W25 1043 aa18.9■□□□□ 0.62
CCDC40-205ENST00000571028 ANO8Q9HCE9 1232 aaPredicted RBP18.9■□□□□ 0.62
CCDC40-205ENST00000571028 CCDC61Q9Y6R9 512 aa18.9■□□□□ 0.62
CCDC40-205ENST00000571028 DDB1Q16531 1140 aa18.89■□□□□ 0.61
CCDC40-205ENST00000571028 CRB1P82279 1406 aa18.89■□□□□ 0.61
CCDC40-205ENST00000571028 GCP02774 474 aa18.88■□□□□ 0.61
CCDC40-205ENST00000571028 USP19O94966 1318 aa18.88■□□□□ 0.61
CCDC40-205ENST00000571028 COL5A2P05997 1499 aaPredicted RBP18.88■□□□□ 0.61
CCDC40-205ENST00000571028 PARP4Q9UKK3 1724 aaKnown RBP18.88■□□□□ 0.61
CCDC40-205ENST00000571028 LMO7Q8WWI1 1683 aa18.87■□□□□ 0.61
CCDC40-205ENST00000571028 TOM1L2Q6ZVM7 507 aa18.86■□□□□ 0.61
CCDC40-205ENST00000571028 STK32BQ9NY57 414 aa18.86■□□□□ 0.61
CCDC40-205ENST00000571028 TIMELESSQ9UNS1 1208 aa18.86■□□□□ 0.61
CCDC40-205ENST00000571028 ATF5Q9Y2D1 282 aaPredicted RBP18.86■□□□□ 0.61
CCDC40-205ENST00000571028 PLEKHG3A1L390 1219 aa18.85■□□□□ 0.61
CCDC40-205ENST00000571028 RGPD3A6NKT7 1758 aaPredicted RBP18.85■□□□□ 0.61
CCDC40-205ENST00000571028 RGPD4Q7Z3J3 1758 aa18.85■□□□□ 0.61
CCDC40-205ENST00000571028 ROCK2O75116 1388 aaKnown RBP18.84■□□□□ 0.61
CCDC40-205ENST00000571028 PDGFDQ9GZP0 370 aaPredicted RBP18.84■□□□□ 0.61
CCDC40-205ENST00000571028 FHDC1Q9C0D6 1143 aaPredicted RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms