RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 JUNDP17535 347 aa10.38□□□□□ -0.75
UBR1-208ENST00000569066 MAFBQ9Y5Q3 323 aaPredicted RBP10.38□□□□□ -0.75
UBR1-208ENST00000569066 NR1I2O75469 434 aa10.37□□□□□ -0.75
UBR1-208ENST00000569066 CTHP32929 405 aa10.37□□□□□ -0.75
UBR1-208ENST00000569066 KRTAP3-3Q9BYR6 98 aa10.37□□□□□ -0.75
UBR1-208ENST00000569066 KRTAP3-2Q9BYR7 98 aa10.37□□□□□ -0.75
UBR1-208ENST00000569066 PTPRNQ16849 979 aa10.37□□□□□ -0.75
UBR1-208ENST00000569066 NR1H3Q13133 447 aa10.36□□□□□ -0.75
UBR1-208ENST00000569066 ACIN1Q9UKV3 1341 aaKnown RBP10.35□□□□□ -0.75
UBR1-208ENST00000569066 ZBBXA8MT70 800 aa10.35□□□□□ -0.75
UBR1-208ENST00000569066 SPSB2Q99619 263 aa10.35□□□□□ -0.75
UBR1-208ENST00000569066 KCTD17Q8N5Z5 321 aa10.35□□□□□ -0.75
UBR1-208ENST00000569066 OCSTAMPQ9BR26 566 aa10.35□□□□□ -0.75
UBR1-208ENST00000569066 EIF4G2P78344 907 aaKnown RBP eCLIP10.34□□□□□ -0.75
UBR1-208ENST00000569066 THSD4Q6ZMP0 1018 aa10.34□□□□□ -0.75
UBR1-208ENST00000569066 KCTD12Q96CX2 325 aaKnown RBP10.34□□□□□ -0.75
UBR1-208ENST00000569066 SOX11P35716 441 aa10.33□□□□□ -0.76
UBR1-208ENST00000569066 NUDT12Q9BQG2 462 aa10.33□□□□□ -0.76
UBR1-208ENST00000569066 DXOO77932 396 aaKnown RBP10.33□□□□□ -0.76
UBR1-208ENST00000569066 CCNYL3P0C7X3 344 aa10.33□□□□□ -0.76
UBR1-208ENST00000569066 PNMA1Q8ND90 353 aa10.32□□□□□ -0.76
UBR1-208ENST00000569066 POTEMA6NI47 508 aa10.31□□□□□ -0.76
UBR1-208ENST00000569066 DEPDC4Q8N2C3 294 aa10.31□□□□□ -0.76
UBR1-208ENST00000569066 FAM174AQ8TBP5 190 aa10.31□□□□□ -0.76
UBR1-208ENST00000569066 ATP9BO43861 1147 aa10.31□□□□□ -0.76
UBR1-208ENST00000569066 MSS51Q4VC12 460 aa10.31□□□□□ -0.76
UBR1-208ENST00000569066 EVA1BQ9NVM1 165 aa10.3□□□□□ -0.76
UBR1-208ENST00000569066 MMP16P51512 607 aa10.29□□□□□ -0.76
UBR1-208ENST00000569066 ZNF516Q92618 1163 aa10.29□□□□□ -0.76
UBR1-208ENST00000569066 PTCRAQ6ISU1 281 aaPredicted RBP10.28□□□□□ -0.76
UBR1-208ENST00000569066 CSB-PGBD3P0DP91 1061 aa10.28□□□□□ -0.76
UBR1-208ENST00000569066 KCNH2Q12809 1159 aa10.28□□□□□ -0.76
UBR1-208ENST00000569066 MTRQ99707 1265 aa10.28□□□□□ -0.76
UBR1-208ENST00000569066 ZPR1O75312 459 aa10.27□□□□□ -0.76
UBR1-208ENST00000569066 KANK4Q5T7N3 995 aaPredicted RBP10.27□□□□□ -0.76
UBR1-208ENST00000569066 TMEM88BA6NKF7 163 aa10.27□□□□□ -0.77
UBR1-208ENST00000569066 USP17L3A6NCW0 530 aa10.26□□□□□ -0.77
UBR1-208ENST00000569066 USP17L4A6NCW7 530 aa10.26□□□□□ -0.77
UBR1-208ENST00000569066 PTPN5P54829 565 aa10.26□□□□□ -0.77
UBR1-208ENST00000569066 USP17L2Q6R6M4 530 aa10.26□□□□□ -0.77
UBR1-208ENST00000569066 USP17L1Q7RTZ2 530 aa10.26□□□□□ -0.77
UBR1-208ENST00000569066 CCDC24Q8N4L8 307 aa10.26□□□□□ -0.77
UBR1-208ENST00000569066 SKIP12755 728 aa10.26□□□□□ -0.77
UBR1-208ENST00000569066 GZF1Q9H116 711 aaPredicted RBP10.26□□□□□ -0.77
UBR1-208ENST00000569066 STK32AQ8WU08 396 aa10.25□□□□□ -0.77
UBR1-208ENST00000569066 ZMIZ1Q9ULJ6 1067 aa10.25□□□□□ -0.77
UBR1-208ENST00000569066 CCDC9Q9Y3X0 531 aaKnown RBP10.25□□□□□ -0.77
UBR1-208ENST00000569066 USP17L5A8MUK1 530 aa10.24□□□□□ -0.77
UBR1-208ENST00000569066 ATG7O95352 703 aa10.24□□□□□ -0.77
UBR1-208ENST00000569066 UNC93B1Q9H1C4 597 aa10.24□□□□□ -0.77
UBR1-208ENST00000569066 USTQ9Y2C2 406 aa10.24□□□□□ -0.77
UBR1-208ENST00000569066 PCDHB9Q9Y5E1 797 aa10.24□□□□□ -0.77
UBR1-208ENST00000569066 ZC3H4Q9UPT8 1303 aaKnown RBP10.24□□□□□ -0.77
UBR1-208ENST00000569066 ADH1BP00325 375 aa10.24□□□□□ -0.77
UBR1-208ENST00000569066 ADAM32Q8TC27 787 aa10.24□□□□□ -0.77
UBR1-208ENST00000569066 NKX2-3Q8TAU0 364 aa10.23□□□□□ -0.77
UBR1-208ENST00000569066 CARD14Q9BXL6 1004 aa10.23□□□□□ -0.77
UBR1-208ENST00000569066 CEP126Q9P2H0 1117 aa10.23□□□□□ -0.77
UBR1-208ENST00000569066 TSGA10IPQ3SY00 556 aa10.22□□□□□ -0.77
UBR1-208ENST00000569066 CRTC2Q53ET0 693 aaPredicted RBP10.22□□□□□ -0.77
UBR1-208ENST00000569066 PDXDC2PQ6P474 469 aa10.22□□□□□ -0.77
UBR1-208ENST00000569066 NCOA4Q13772 614 aa10.22□□□□□ -0.77
UBR1-208ENST00000569066 TJAP1Q5JTD0 557 aa10.22□□□□□ -0.77
UBR1-208ENST00000569066 VRTNQ9H8Y1 702 aa10.22□□□□□ -0.77
UBR1-208ENST00000569066 MAGEB6P1A0A0J9YX57 407 aa10.21□□□□□ -0.78
UBR1-208ENST00000569066 PTK2Q05397 1052 aa10.21□□□□□ -0.78
UBR1-208ENST00000569066 TMEM164Q5U3C3 297 aa10.21□□□□□ -0.78
UBR1-208ENST00000569066 NBPF14Q5TI25 921 aa10.2□□□□□ -0.78
UBR1-208ENST00000569066 ARHGAP9Q9BRR9 750 aa10.2□□□□□ -0.78
UBR1-208ENST00000569066 BRD1O95696 1058 aa10.19□□□□□ -0.78
UBR1-208ENST00000569066 LINC01559Q495D7 138 aa10.19□□□□□ -0.78
UBR1-208ENST00000569066 SH3BP5LQ7L8J4 393 aa10.19□□□□□ -0.78
UBR1-208ENST00000569066 S1PR4O95977 384 aa10.19□□□□□ -0.78
UBR1-208ENST00000569066 RNF135Q8IUD6 432 aa10.19□□□□□ -0.78
UBR1-208ENST00000569066 SLFNL1Q499Z3 407 aa10.18□□□□□ -0.78
UBR1-208ENST00000569066 SLC6A16Q9GZN6 736 aa10.18□□□□□ -0.78
UBR1-208ENST00000569066 MKRN1Q9UHC7 482 aaKnown RBP10.18□□□□□ -0.78
UBR1-208ENST00000569066 GPSM3Q9Y4H4 160 aa10.18□□□□□ -0.78
UBR1-208ENST00000569066 NPM2Q86SE8 214 aaKnown RBP10.18□□□□□ -0.78
UBR1-208ENST00000569066 PHTF2Q8N3S3 785 aa10.18□□□□□ -0.78
UBR1-208ENST00000569066 NFATC2IPQ8NCF5 419 aa10.18□□□□□ -0.78
UBR1-208ENST00000569066 C4orf48Q5BLP8 95 aa10.17□□□□□ -0.78
UBR1-208ENST00000569066 PLPP7Q8NBV4 271 aa10.17□□□□□ -0.78
UBR1-208ENST00000569066 ARMC2Q8NEN0 867 aa10.17□□□□□ -0.78
UBR1-208ENST00000569066 NOVA2Q9UNW9 492 aaKnown RBP10.17□□□□□ -0.78
UBR1-208ENST00000569066 FCF1Q9Y324 198 aaKnown RBP10.17□□□□□ -0.78
UBR1-208ENST00000569066 ZBTB33Q86T24 672 aa10.17□□□□□ -0.78
UBR1-208ENST00000569066 BAP1Q92560 729 aa10.17□□□□□ -0.78
UBR1-208ENST00000569066 FOXJ1Q92949 421 aa10.17□□□□□ -0.78
UBR1-208ENST00000569066 TMCO4Q5TGY1 634 aa10.16□□□□□ -0.78
UBR1-208ENST00000569066 GPKOWQ92917 476 aaPredicted RBP eCLIP10.16□□□□□ -0.78
UBR1-208ENST00000569066 SLAIN2Q9P270 581 aa10.16□□□□□ -0.78
UBR1-208ENST00000569066 SH3RF1Q7Z6J0 888 aa10.16□□□□□ -0.78
UBR1-208ENST00000569066 IVNS1ABPQ9Y6Y0 642 aa10.16□□□□□ -0.78
UBR1-208ENST00000569066 USP17L15C9J2P7 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L10C9JJH3 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L13C9JLJ4 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L12C9JPN9 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L11C9JVI0 530 aa10.15□□□□□ -0.78
UBR1-208ENST00000569066 USP17L21D6R901 530 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms