RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 LARP6Q9BRS8 491 aaKnown RBP4.69□□□□□ -1.66
VPS35-209ENST00000568642 TOR4AQ9NXH8 423 aa4.69□□□□□ -1.66
VPS35-209ENST00000568642 PNMA3Q9UL41 463 aa4.69□□□□□ -1.66
VPS35-209ENST00000568642 ZNF777Q9ULD5 760 aaPredicted RBP4.69□□□□□ -1.66
VPS35-209ENST00000568642 PTPRTO14522 1441 aa4.69□□□□□ -1.66
VPS35-209ENST00000568642 PRDM2Q13029 1718 aa4.69□□□□□ -1.66
VPS35-209ENST00000568642 TARBP1Q13395 1621 aaKnown RBP4.68□□□□□ -1.66
VPS35-209ENST00000568642 MADDQ8WXG6 1647 aa4.68□□□□□ -1.66
VPS35-209ENST00000568642 RIMS1Q86UR5 1692 aaKnown RBP4.68□□□□□ -1.66
VPS35-209ENST00000568642 HMGB1P09429 215 aaKnown RBP4.68□□□□□ -1.66
VPS35-209ENST00000568642 MCM6Q14566 821 aa4.68□□□□□ -1.66
VPS35-209ENST00000568642 CTC1Q2NKJ3 1217 aa4.68□□□□□ -1.66
VPS35-209ENST00000568642 TRIM47Q96LD4 638 aa4.68□□□□□ -1.66
VPS35-209ENST00000568642 ATP13A2Q9NQ11 1180 aa4.68□□□□□ -1.66
VPS35-209ENST00000568642 CEP170Q5SW79 1584 aa4.68□□□□□ -1.66
VPS35-209ENST00000568642 PEG3Q9GZU2 1588 aa4.68□□□□□ -1.66
VPS35-209ENST00000568642 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.67□□□□□ -1.66
VPS35-209ENST00000568642 E9PSI1 815 aa4.67□□□□□ -1.66
VPS35-209ENST00000568642 HSPA1LP34931 641 aa4.67□□□□□ -1.66
VPS35-209ENST00000568642 MFSD10Q14728 455 aa4.67□□□□□ -1.66
VPS35-209ENST00000568642 POM121Q96HA1 1249 aa4.67□□□□□ -1.66
VPS35-209ENST00000568642 GOPCQ9HD26 462 aa4.67□□□□□ -1.66
VPS35-209ENST00000568642 RYDENQ9NUL5 291 aaKnown RBP4.67□□□□□ -1.66
VPS35-209ENST00000568642 MLLT3P42568 568 aaPredicted RBP4.66□□□□□ -1.66
VPS35-209ENST00000568642 PRIM1P49642 420 aaKnown RBP4.66□□□□□ -1.66
VPS35-209ENST00000568642 PRSS12P56730 875 aa4.66□□□□□ -1.66
VPS35-209ENST00000568642 EN1Q05925 392 aaPredicted RBP4.66□□□□□ -1.66
VPS35-209ENST00000568642 DDX12PQ92771 950 aa4.66□□□□□ -1.66
VPS35-209ENST00000568642 PCDHB3Q9Y5E6 796 aa4.66□□□□□ -1.66
VPS35-209ENST00000568642 BCORL1Q5H9F3 1711 aa4.66□□□□□ -1.66
VPS35-209ENST00000568642 MAGI1Q96QZ7 1491 aaPredicted RBP4.65□□□□□ -1.66
VPS35-209ENST00000568642 NBPF26B4DH59 902 aa4.65□□□□□ -1.67
VPS35-209ENST00000568642 SWT1Q5T5J6 900 aaKnown RBP4.65□□□□□ -1.67
VPS35-209ENST00000568642 KRTAP9-2Q9BYQ4 174 aa4.65□□□□□ -1.67
VPS35-209ENST00000568642 RGS17Q9UGC6 210 aaPredicted RBP4.65□□□□□ -1.67
VPS35-209ENST00000568642 AMOTL2Q9Y2J4 779 aa4.65□□□□□ -1.67
VPS35-209ENST00000568642 ADCY10Q96PN6 1610 aa4.64□□□□□ -1.67
VPS35-209ENST00000568642 TOPBP1Q92547 1522 aa4.64□□□□□ -1.67
VPS35-209ENST00000568642 SENP3-EIF4A1A0A087X0R7 540 aa4.64□□□□□ -1.67
VPS35-209ENST00000568642 KRTAP9-6A0A140TA67 174 aa4.64□□□□□ -1.67
VPS35-209ENST00000568642 MAP3K7O43318 606 aa4.64□□□□□ -1.67
VPS35-209ENST00000568642 NUDT18Q6ZVK8 323 aa4.64□□□□□ -1.67
VPS35-209ENST00000568642 SERPINA10Q9UK55 444 aa4.64□□□□□ -1.67
VPS35-209ENST00000568642 PREX1Q8TCU6 1659 aa4.64□□□□□ -1.67
VPS35-209ENST00000568642 YEATS2Q9ULM3 1422 aa4.63□□□□□ -1.67
VPS35-209ENST00000568642 VEGFBP49765 207 aa4.63□□□□□ -1.67
VPS35-209ENST00000568642 HDGFP51858 240 aaKnown RBP4.63□□□□□ -1.67
VPS35-209ENST00000568642 KCNMA1Q12791 1236 aa4.63□□□□□ -1.67
VPS35-209ENST00000568642 PROSER2Q86WR7 435 aaPredicted RBP4.63□□□□□ -1.67
VPS35-209ENST00000568642 PARP9Q8IXQ6 854 aa4.63□□□□□ -1.67
VPS35-209ENST00000568642 CYP4X1Q8N118 509 aa4.63□□□□□ -1.67
VPS35-209ENST00000568642 SLC16A10Q8TF71 515 aa4.63□□□□□ -1.67
VPS35-209ENST00000568642 SHROOM2Q13796 1616 aa4.63□□□□□ -1.67
VPS35-209ENST00000568642 ERBB4Q15303 1308 aa4.63□□□□□ -1.67
VPS35-209ENST00000568642 ZCCHC6Q5VYS8 1495 aaKnown RBP4.62□□□□□ -1.67
VPS35-209ENST00000568642 TEX14Q8IWB6 1497 aa4.62□□□□□ -1.67
VPS35-209ENST00000568642 AMHR2Q16671 573 aa4.62□□□□□ -1.67
VPS35-209ENST00000568642 CFTRP13569 1480 aa4.62□□□□□ -1.67
VPS35-209ENST00000568642 GLI2P10070 1586 aa4.61□□□□□ -1.67
VPS35-209ENST00000568642 DPYSL4O14531 572 aa4.61□□□□□ -1.67
VPS35-209ENST00000568642 SRPK2P78362 688 aaKnown RBP4.61□□□□□ -1.67
VPS35-209ENST00000568642 CAMK2BQ13554 666 aa4.61□□□□□ -1.67
VPS35-209ENST00000568642 CCDC125Q86Z20 511 aa4.61□□□□□ -1.67
VPS35-209ENST00000568642 SLF2Q8IX21 1173 aa4.61□□□□□ -1.67
VPS35-209ENST00000568642 IRF7Q92985 503 aa4.61□□□□□ -1.67
VPS35-209ENST00000568642 SENP2Q9HC62 589 aa4.61□□□□□ -1.67
VPS35-209ENST00000568642 NXF1Q9UBU9 619 aaKnown RBP4.61□□□□□ -1.67
VPS35-209ENST00000568642 MAP3K4Q9Y6R4 1608 aa4.61□□□□□ -1.67
VPS35-209ENST00000568642 RSPH4AQ5TD94 716 aa4.6□□□□□ -1.67
VPS35-209ENST00000568642 POTEAQ6S8J7 498 aa4.6□□□□□ -1.67
VPS35-209ENST00000568642 GPIHBP1Q8IV16 184 aa4.6□□□□□ -1.67
VPS35-209ENST00000568642 DDRGK1Q96HY6 314 aa4.6□□□□□ -1.67
VPS35-209ENST00000568642 KIAA1522Q9P206 1035 aaPredicted RBP4.6□□□□□ -1.67
VPS35-209ENST00000568642 PBRM1Q86U86 1689 aa4.6□□□□□ -1.67
VPS35-209ENST00000568642 WDR97A6NE52 1622 aa4.59□□□□□ -1.67
VPS35-209ENST00000568642 ADH1BP00325 375 aa4.59□□□□□ -1.67
VPS35-209ENST00000568642 SMPD1P17405 629 aa4.59□□□□□ -1.67
VPS35-209ENST00000568642 PIP4K2BP78356 416 aa4.59□□□□□ -1.67
VPS35-209ENST00000568642 KRTAP1-3Q8IUG1 177 aa4.59□□□□□ -1.67
VPS35-209ENST00000568642 KRI1Q8N9T8 703 aaKnown RBP4.59□□□□□ -1.67
VPS35-209ENST00000568642 SLC6A16Q9GZN6 736 aa4.59□□□□□ -1.67
VPS35-209ENST00000568642 USP35Q9P2H5 1018 aa4.59□□□□□ -1.67
VPS35-209ENST00000568642 SETBP1Q9Y6X0 1596 aa4.58□□□□□ -1.68
VPS35-209ENST00000568642 BRD2P25440 801 aaKnown RBP4.58□□□□□ -1.68
VPS35-209ENST00000568642 YY1P25490 414 aa4.58□□□□□ -1.68
VPS35-209ENST00000568642 NOM1Q5C9Z4 860 aaKnown RBP4.58□□□□□ -1.68
VPS35-209ENST00000568642 SMYD5Q6GMV2 418 aa4.58□□□□□ -1.68
VPS35-209ENST00000568642 REPIN1Q9BWE0 567 aaKnown RBP4.58□□□□□ -1.68
VPS35-209ENST00000568642 CDHR5Q9HBB8 845 aa4.58□□□□□ -1.68
VPS35-209ENST00000568642 COG6Q9Y2V7 657 aa4.58□□□□□ -1.68
VPS35-209ENST00000568642 KIAA0586Q9BVV6 1533 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 TDRD9Q8NDG6 1382 aaKnown RBP4.57□□□□□ -1.68
VPS35-209ENST00000568642 TTC24A2A3L6 582 aaPredicted RBP4.57□□□□□ -1.68
VPS35-209ENST00000568642 H3BM21 787 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 GDF11O95390 407 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 MS4A1P11836 297 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 FBXO31Q5XUX0 539 aaPredicted RBP4.57□□□□□ -1.68
VPS35-209ENST00000568642 TXNDC2Q86VQ3 553 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 TMEM151AQ8N4L1 468 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 UBE2Q2Q8WVN8 375 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms