RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SPATA31A5Q5VU36 1347 aa20.2■□□□□ 0.82
CLN3-235ENST00000568497 SPATA31A7Q8IWB4 1347 aa20.2■□□□□ 0.82
CLN3-235ENST00000568497 PARD3Q8TEW0 1356 aa20.2■□□□□ 0.82
CLN3-235ENST00000568497 THSD7AQ9UPZ6 1657 aa20.19■□□□□ 0.82
CLN3-235ENST00000568497 NRXN1Q9ULB1 1477 aa20.19■□□□□ 0.82
CLN3-235ENST00000568497 DCAF11Q8TEB1 546 aa20.19■□□□□ 0.82
CLN3-235ENST00000568497 NBPF8Q3BBV2 869 aa20.18■□□□□ 0.82
CLN3-235ENST00000568497 NBPF14Q5TI25 921 aa20.18■□□□□ 0.82
CLN3-235ENST00000568497 FAM196AQ6ZSG2 479 aa20.18■□□□□ 0.82
CLN3-235ENST00000568497 SPON1Q9HCB6 807 aa20.18■□□□□ 0.82
CLN3-235ENST00000568497 CFAP70Q5T0N1 1121 aa20.17■□□□□ 0.82
CLN3-235ENST00000568497 PMFBP1Q8TBY8 1022 aa20.16■□□□□ 0.82
CLN3-235ENST00000568497 NINLQ9Y2I6 1382 aa20.16■□□□□ 0.82
CLN3-235ENST00000568497 YTHDC2Q9H6S0 1430 aaKnown RBP20.16■□□□□ 0.82
CLN3-235ENST00000568497 RREB1Q92766 1687 aa20.16■□□□□ 0.82
CLN3-235ENST00000568497 NUP188Q5SRE5 1749 aa20.16■□□□□ 0.82
CLN3-235ENST00000568497 SENP3-EIF4A1A0A087X0R7 540 aa20.15■□□□□ 0.82
CLN3-235ENST00000568497 CAMTA1Q9Y6Y1 1673 aa20.14■□□□□ 0.81
CLN3-235ENST00000568497 KCNQ2O43526 872 aa20.13■□□□□ 0.81
CLN3-235ENST00000568497 PRDM11Q9NQV5 511 aa20.13■□□□□ 0.81
CLN3-235ENST00000568497 SAFB2Q14151 953 aaKnown RBP eCLIP20.12■□□□□ 0.81
CLN3-235ENST00000568497 PIK3C2GO75747 1445 aa20.11■□□□□ 0.81
CLN3-235ENST00000568497 ZNF784Q8NCA9 323 aaPredicted RBP20.1■□□□□ 0.81
CLN3-235ENST00000568497 STRN4Q9NRL3 753 aa20.1■□□□□ 0.81
CLN3-235ENST00000568497 L3MBTL2Q969R5 705 aa20.09■□□□□ 0.81
CLN3-235ENST00000568497 USP35Q9P2H5 1018 aa20.09■□□□□ 0.81
CLN3-235ENST00000568497 TRPM3Q9HCF6 1732 aaPredicted RBP20.09■□□□□ 0.81
CLN3-235ENST00000568497 ANKARQ7Z5J8 1434 aa20.09■□□□□ 0.81
CLN3-235ENST00000568497 GPRASP1Q5JY77 1395 aa20.08■□□□□ 0.81
CLN3-235ENST00000568497 SPATA31A1Q5TZJ5 1347 aa20.08■□□□□ 0.81
CLN3-235ENST00000568497 PDE3BQ13370 1112 aa20.08■□□□□ 0.81
CLN3-235ENST00000568497 ALS2Q96Q42 1657 aa20.07■□□□□ 0.8
CLN3-235ENST00000568497 IFFO2Q5TF58 517 aa20.07■□□□□ 0.8
CLN3-235ENST00000568497 C14orf93Q9H972 538 aaKnown RBP20.06■□□□□ 0.8
CLN3-235ENST00000568497 PAK3O75914 559 aaPredicted RBP20.05■□□□□ 0.8
CLN3-235ENST00000568497 CHRNA2Q15822 529 aa20.04■□□□□ 0.8
CLN3-235ENST00000568497 PRAM1Q96QH2 718 aa20.04■□□□□ 0.8
CLN3-235ENST00000568497 NBPF1Q3BBV0 1214 aa20.03■□□□□ 0.8
CLN3-235ENST00000568497 CRYBG1Q9Y4K1 1723 aa20.02■□□□□ 0.8
CLN3-235ENST00000568497 POGKQ9P215 609 aa20.02■□□□□ 0.8
CLN3-235ENST00000568497 KIAA0232Q92628 1395 aa20.02■□□□□ 0.8
CLN3-235ENST00000568497 NRKQ7Z2Y5 1582 aa20.02■□□□□ 0.8
CLN3-235ENST00000568497 TRAK1Q9UPV9 953 aa20.01■□□□□ 0.79
CLN3-235ENST00000568497 EVA1CP58658 441 aa19.99■□□□□ 0.79
CLN3-235ENST00000568497 C1QTNF8P60827 252 aa19.99■□□□□ 0.79
CLN3-235ENST00000568497 NGDNQ8NEJ9 315 aaKnown RBP19.99■□□□□ 0.79
CLN3-235ENST00000568497 DLC1Q96QB1 1528 aa19.98■□□□□ 0.79
CLN3-235ENST00000568497 HIRIP3Q9BW71 556 aaPredicted RBP19.98■□□□□ 0.79
CLN3-235ENST00000568497 ZC3H6P61129 1189 aaKnown RBP19.97■□□□□ 0.79
CLN3-235ENST00000568497 BARGINQ6ZT62 677 aa19.97■□□□□ 0.79
CLN3-235ENST00000568497 EIF3AQ14152 1382 aaKnown RBP19.96■□□□□ 0.79
CLN3-235ENST00000568497 ADGRB1O14514 1584 aa19.96■□□□□ 0.79
CLN3-235ENST00000568497 MYOM1P52179 1685 aa19.96■□□□□ 0.79
CLN3-235ENST00000568497 SSH2Q76I76 1423 aa19.95■□□□□ 0.78
CLN3-235ENST00000568497 ZBTB7AO95365 584 aa19.95■□□□□ 0.78
CLN3-235ENST00000568497 PHRF1Q9P1Y6 1649 aaKnown RBP19.94■□□□□ 0.78
CLN3-235ENST00000568497 PRR36Q9H6K5 1346 aa19.94■□□□□ 0.78
CLN3-235ENST00000568497 CASZ1Q86V15 1759 aa19.93■□□□□ 0.78
CLN3-235ENST00000568497 TCP11L2Q8N4U5 519 aa19.93■□□□□ 0.78
CLN3-235ENST00000568497 ANO8Q9HCE9 1232 aaPredicted RBP19.93■□□□□ 0.78
CLN3-235ENST00000568497 CHD4Q14839 1912 aa19.93■□□□□ 0.78
CLN3-235ENST00000568497 MINK1Q8N4C8 1332 aaPredicted RBP19.93■□□□□ 0.78
CLN3-235ENST00000568497 CCER1Q8TC90 406 aaPredicted RBP19.92■□□□□ 0.78
CLN3-235ENST00000568497 TULP4Q9NRJ4 1543 aa19.92■□□□□ 0.78
CLN3-235ENST00000568497 NUTM2GQ5VZR2 741 aa19.91■□□□□ 0.78
CLN3-235ENST00000568497 LARP1Q6PKG0 1096 aaKnown RBP19.91■□□□□ 0.78
CLN3-235ENST00000568497 BCL11BQ9C0K0 894 aaPredicted RBP19.91■□□□□ 0.78
CLN3-235ENST00000568497 PDGFDQ9GZP0 370 aaPredicted RBP19.91■□□□□ 0.78
CLN3-235ENST00000568497 ATF5Q9Y2D1 282 aaPredicted RBP19.91■□□□□ 0.78
CLN3-235ENST00000568497 UTRNP46939 3433 aa19.91■□□□□ 0.78
CLN3-235ENST00000568497 TONSLQ96HA7 1378 aa19.91■□□□□ 0.78
CLN3-235ENST00000568497 C11orf95C9JLR9 678 aaPredicted RBP19.9■□□□□ 0.78
CLN3-235ENST00000568497 FHDC1Q9C0D6 1143 aaPredicted RBP19.89■□□□□ 0.77
CLN3-235ENST00000568497 RGPD3A6NKT7 1758 aaPredicted RBP19.88■□□□□ 0.77
CLN3-235ENST00000568497 RGPD4Q7Z3J3 1758 aa19.88■□□□□ 0.77
CLN3-235ENST00000568497 OVOS2A0A0G2JMS6 1433 aa19.88■□□□□ 0.77
CLN3-235ENST00000568497 OVOS2A0A0J9YW53 1432 aa19.88■□□□□ 0.77
CLN3-235ENST00000568497 OVOS2Q6IE36 1432 aa19.88■□□□□ 0.77
CLN3-235ENST00000568497 WASLO00401 505 aaPredicted RBP19.88■□□□□ 0.77
CLN3-235ENST00000568497 SYT17Q9BSW7 474 aa19.88■□□□□ 0.77
CLN3-235ENST00000568497 PTGER2P43116 358 aa19.87■□□□□ 0.77
CLN3-235ENST00000568497 PARP4Q9UKK3 1724 aaKnown RBP19.86■□□□□ 0.77
CLN3-235ENST00000568497 PLSCR1O15162 318 aa19.86■□□□□ 0.77
CLN3-235ENST00000568497 THRAP3Q9Y2W1 955 aaKnown RBP19.86■□□□□ 0.77
CLN3-235ENST00000568497 ATP7BP35670 1465 aa19.86■□□□□ 0.77
CLN3-235ENST00000568497 GIGYF1O75420 1035 aaPredicted RBP19.85■□□□□ 0.77
CLN3-235ENST00000568497 ITSN1Q15811 1721 aa19.85■□□□□ 0.77
CLN3-235ENST00000568497 TRPM1Q7Z4N2 1603 aa19.84■□□□□ 0.77
CLN3-235ENST00000568497 ARHGEF28Q8N1W1 1705 aaKnown RBP19.83■□□□□ 0.77
CLN3-235ENST00000568497 SBF2Q86WG5 1849 aa19.82■□□□□ 0.76
CLN3-235ENST00000568497 STAC3Q96MF2 364 aa19.82■□□□□ 0.76
CLN3-235ENST00000568497 STK32BQ9NY57 414 aa19.82■□□□□ 0.76
CLN3-235ENST00000568497 PEAK1Q9H792 1746 aa19.82■□□□□ 0.76
CLN3-235ENST00000568497 ROCK2O75116 1388 aaKnown RBP19.81■□□□□ 0.76
CLN3-235ENST00000568497 CPDO75976 1380 aa19.81■□□□□ 0.76
CLN3-235ENST00000568497 LMO7Q8WWI1 1683 aa19.81■□□□□ 0.76
CLN3-235ENST00000568497 KIAA1210Q9ULL0 1709 aa19.8■□□□□ 0.76
CLN3-235ENST00000568497 ZBTB7CA1YPR0 619 aa19.79■□□□□ 0.76
CLN3-235ENST00000568497 PTF1AQ7RTS3 328 aa19.79■□□□□ 0.76
CLN3-235ENST00000568497 LRRC37A3O60309 1634 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms