RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 YTHDC2Q9H6S0 1430 aaKnown RBP17.81■□□□□ 0.44
CLK3-222ENST00000568232 SLC4A1APQ9BWU0 796 aaKnown RBP17.81■□□□□ 0.44
CLK3-222ENST00000568232 SAFB2Q14151 953 aaKnown RBP eCLIP17.8■□□□□ 0.44
CLK3-222ENST00000568232 THSD7AQ9UPZ6 1657 aa17.8■□□□□ 0.44
CLK3-222ENST00000568232 KNDC1Q76NI1 1749 aa17.79■□□□□ 0.44
CLK3-222ENST00000568232 IFT172Q9UG01 1749 aa17.78■□□□□ 0.44
CLK3-222ENST00000568232 C1QBPQ07021 282 aaKnown RBP17.78■□□□□ 0.44
CLK3-222ENST00000568232 FAM196AQ6ZSG2 479 aa17.78■□□□□ 0.44
CLK3-222ENST00000568232 COL14A1Q05707 1796 aaKnown RBP17.77■□□□□ 0.44
CLK3-222ENST00000568232 SIRT1Q96EB6 747 aa17.77■□□□□ 0.44
CLK3-222ENST00000568232 PPP1R1BQ9UD71 204 aaPredicted RBP17.77■□□□□ 0.44
CLK3-222ENST00000568232 SPATA31A1Q5TZJ5 1347 aa17.75■□□□□ 0.43
CLK3-222ENST00000568232 ADGRB2O60241 1585 aa17.75■□□□□ 0.43
CLK3-222ENST00000568232 PIK3C2GO75747 1445 aa17.75■□□□□ 0.43
CLK3-222ENST00000568232 PRAM1Q96QH2 718 aa17.75■□□□□ 0.43
CLK3-222ENST00000568232 SPON1Q9HCB6 807 aa17.75■□□□□ 0.43
CLK3-222ENST00000568232 PARD3Q8TEW0 1356 aa17.75■□□□□ 0.43
CLK3-222ENST00000568232 ANKRD30BQ9BXX2 1392 aa17.75■□□□□ 0.43
CLK3-222ENST00000568232 SPATA31E1Q6ZUB1 1445 aa17.74■□□□□ 0.43
CLK3-222ENST00000568232 NBPF8Q3BBV2 869 aa17.74■□□□□ 0.43
CLK3-222ENST00000568232 NBPF14Q5TI25 921 aa17.74■□□□□ 0.43
CLK3-222ENST00000568232 PRDM11Q9NQV5 511 aa17.74■□□□□ 0.43
CLK3-222ENST00000568232 KCNQ2O43526 872 aa17.73■□□□□ 0.43
CLK3-222ENST00000568232 TRPM3Q9HCF6 1732 aaPredicted RBP17.72■□□□□ 0.43
CLK3-222ENST00000568232 CHRNA2Q15822 529 aa17.72■□□□□ 0.43
CLK3-222ENST00000568232 STRN4Q9NRL3 753 aa17.72■□□□□ 0.43
CLK3-222ENST00000568232 USP35Q9P2H5 1018 aa17.72■□□□□ 0.43
CLK3-222ENST00000568232 CFAP70Q5T0N1 1121 aa17.71■□□□□ 0.43
CLK3-222ENST00000568232 C14orf93Q9H972 538 aaKnown RBP17.71■□□□□ 0.43
CLK3-222ENST00000568232 NUP188Q5SRE5 1749 aa17.71■□□□□ 0.43
CLK3-222ENST00000568232 RREB1Q92766 1687 aa17.71■□□□□ 0.42
CLK3-222ENST00000568232 UTRNP46939 3433 aa17.7■□□□□ 0.42
CLK3-222ENST00000568232 ALS2Q96Q42 1657 aa17.7■□□□□ 0.42
CLK3-222ENST00000568232 CAMTA1Q9Y6Y1 1673 aa17.7■□□□□ 0.42
CLK3-222ENST00000568232 ACIN1Q9UKV3 1341 aaKnown RBP17.7■□□□□ 0.42
CLK3-222ENST00000568232 GPRASP1Q5JY77 1395 aa17.69■□□□□ 0.42
CLK3-222ENST00000568232 NINLQ9Y2I6 1382 aa17.69■□□□□ 0.42
CLK3-222ENST00000568232 PAK3O75914 559 aaPredicted RBP17.69■□□□□ 0.42
CLK3-222ENST00000568232 HIRIP3Q9BW71 556 aaPredicted RBP17.69■□□□□ 0.42
CLK3-222ENST00000568232 ANKARQ7Z5J8 1434 aa17.69■□□□□ 0.42
CLK3-222ENST00000568232 DHX57Q6P158 1386 aaKnown RBP17.68■□□□□ 0.42
CLK3-222ENST00000568232 KIAA0232Q92628 1395 aa17.68■□□□□ 0.42
CLK3-222ENST00000568232 PDE3BQ13370 1112 aa17.68■□□□□ 0.42
CLK3-222ENST00000568232 ZNF784Q8NCA9 323 aaPredicted RBP17.68■□□□□ 0.42
CLK3-222ENST00000568232 POGKQ9P215 609 aa17.68■□□□□ 0.42
CLK3-222ENST00000568232 PRR36Q9H6K5 1346 aa17.68■□□□□ 0.42
CLK3-222ENST00000568232 SENP3-EIF4A1A0A087X0R7 540 aa17.66■□□□□ 0.42
CLK3-222ENST00000568232 ZC3H6P61129 1189 aaKnown RBP17.66■□□□□ 0.42
CLK3-222ENST00000568232 CRYBG1Q9Y4K1 1723 aa17.66■□□□□ 0.42
CLK3-222ENST00000568232 NGDNQ8NEJ9 315 aaKnown RBP17.64■□□□□ 0.41
CLK3-222ENST00000568232 NUTM2GQ5VZR2 741 aa17.63■□□□□ 0.41
CLK3-222ENST00000568232 BARGINQ6ZT62 677 aa17.63■□□□□ 0.41
CLK3-222ENST00000568232 PDGFDQ9GZP0 370 aaPredicted RBP17.63■□□□□ 0.41
CLK3-222ENST00000568232 MINK1Q8N4C8 1332 aaPredicted RBP17.63■□□□□ 0.41
CLK3-222ENST00000568232 EVA1CP58658 441 aa17.62■□□□□ 0.41
CLK3-222ENST00000568232 LARP1Q6PKG0 1096 aaKnown RBP17.62■□□□□ 0.41
CLK3-222ENST00000568232 ANO8Q9HCE9 1232 aaPredicted RBP17.61■□□□□ 0.41
CLK3-222ENST00000568232 IFFO2Q5TF58 517 aa17.6■□□□□ 0.41
CLK3-222ENST00000568232 TRAK1Q9UPV9 953 aa17.6■□□□□ 0.41
CLK3-222ENST00000568232 SSH2Q76I76 1423 aa17.6■□□□□ 0.41
CLK3-222ENST00000568232 ZBTB7AO95365 584 aa17.59■□□□□ 0.41
CLK3-222ENST00000568232 TCP11L2Q8N4U5 519 aa17.59■□□□□ 0.41
CLK3-222ENST00000568232 NRKQ7Z2Y5 1582 aa17.58■□□□□ 0.41
CLK3-222ENST00000568232 DLC1Q96QB1 1528 aa17.58■□□□□ 0.41
CLK3-222ENST00000568232 WASLO00401 505 aaPredicted RBP17.58■□□□□ 0.4
CLK3-222ENST00000568232 C1QTNF8P60827 252 aa17.58■□□□□ 0.4
CLK3-222ENST00000568232 MPHOSPH9Q99550 1183 aa17.58■□□□□ 0.4
CLK3-222ENST00000568232 TULP4Q9NRJ4 1543 aa17.57■□□□□ 0.4
CLK3-222ENST00000568232 PTGER2P43116 358 aa17.56■□□□□ 0.4
CLK3-222ENST00000568232 PTF1AQ7RTS3 328 aa17.56■□□□□ 0.4
CLK3-222ENST00000568232 ATF5Q9Y2D1 282 aaPredicted RBP17.56■□□□□ 0.4
CLK3-222ENST00000568232 PHRF1Q9P1Y6 1649 aaKnown RBP17.55■□□□□ 0.4
CLK3-222ENST00000568232 EIF3AQ14152 1382 aaKnown RBP17.54■□□□□ 0.4
CLK3-222ENST00000568232 PLSCR1O15162 318 aa17.54■□□□□ 0.4
CLK3-222ENST00000568232 CASZ1Q86V15 1759 aa17.53■□□□□ 0.4
CLK3-222ENST00000568232 PROM2Q8N271 834 aa17.53■□□□□ 0.4
CLK3-222ENST00000568232 FHDC1Q9C0D6 1143 aaPredicted RBP17.53■□□□□ 0.4
CLK3-222ENST00000568232 MYOM1P52179 1685 aa17.52■□□□□ 0.4
CLK3-222ENST00000568232 SYT17Q9BSW7 474 aa17.52■□□□□ 0.4
CLK3-222ENST00000568232 BCL11BQ9C0K0 894 aaPredicted RBP17.52■□□□□ 0.4
CLK3-222ENST00000568232 ADGRB1O14514 1584 aa17.52■□□□□ 0.39
CLK3-222ENST00000568232 NUDT16Q96DE0 195 aaKnown RBP17.51■□□□□ 0.39
CLK3-222ENST00000568232 THRAP3Q9Y2W1 955 aaKnown RBP17.51■□□□□ 0.39
CLK3-222ENST00000568232 CEP350Q5VT06 3117 aa17.5■□□□□ 0.39
CLK3-222ENST00000568232 OVOS2A0A0G2JMS6 1433 aa17.49■□□□□ 0.39
CLK3-222ENST00000568232 OVOS2A0A0J9YW53 1432 aa17.49■□□□□ 0.39
CLK3-222ENST00000568232 OVOS2Q6IE36 1432 aa17.49■□□□□ 0.39
CLK3-222ENST00000568232 ATP7BP35670 1465 aa17.49■□□□□ 0.39
CLK3-222ENST00000568232 ABTB2Q8N961 1025 aa17.48■□□□□ 0.39
CLK3-222ENST00000568232 LMO7Q8WWI1 1683 aa17.48■□□□□ 0.39
CLK3-222ENST00000568232 PEAK1Q9H792 1746 aa17.47■□□□□ 0.39
CLK3-222ENST00000568232 PARP4Q9UKK3 1724 aaKnown RBP17.47■□□□□ 0.39
CLK3-222ENST00000568232 C11orf95C9JLR9 678 aaPredicted RBP17.47■□□□□ 0.39
CLK3-222ENST00000568232 U3KPZ7 1027 aaPredicted RBP17.47■□□□□ 0.39
CLK3-222ENST00000568232 ACEP12821 1306 aa17.47■□□□□ 0.39
CLK3-222ENST00000568232 CPDO75976 1380 aa17.46■□□□□ 0.39
CLK3-222ENST00000568232 COL5A2P05997 1499 aaPredicted RBP17.45■□□□□ 0.38
CLK3-222ENST00000568232 ZBTB7CA1YPR0 619 aa17.45■□□□□ 0.38
CLK3-222ENST00000568232 DDB1Q16531 1140 aa17.45■□□□□ 0.38
CLK3-222ENST00000568232 RGPD3A6NKT7 1758 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms