RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 YTHDC2Q9H6S0 1430 aaKnown RBP11.84□□□□□ -0.51
HERPUD1-206ENST00000563343 PHRF1Q9P1Y6 1649 aaKnown RBP11.83□□□□□ -0.52
HERPUD1-206ENST00000563343 RGPD3A6NKT7 1758 aaPredicted RBP11.83□□□□□ -0.52
HERPUD1-206ENST00000563343 RGPD4Q7Z3J3 1758 aa11.83□□□□□ -0.52
HERPUD1-206ENST00000563343 ITGAEP38570 1179 aa11.83□□□□□ -0.52
HERPUD1-206ENST00000563343 PSME1Q06323 249 aa11.83□□□□□ -0.52
HERPUD1-206ENST00000563343 CHD4Q14839 1912 aa11.83□□□□□ -0.52
HERPUD1-206ENST00000563343 PIK3C2GO75747 1445 aa11.83□□□□□ -0.52
HERPUD1-206ENST00000563343 SBF2Q86WG5 1849 aa11.82□□□□□ -0.52
HERPUD1-206ENST00000563343 PLEKHG5O94827 1062 aa11.82□□□□□ -0.52
HERPUD1-206ENST00000563343 TMEM132EQ6IEE7 984 aa11.82□□□□□ -0.52
HERPUD1-206ENST00000563343 SPATA31E1Q6ZUB1 1445 aa11.82□□□□□ -0.52
HERPUD1-206ENST00000563343 NINLQ9Y2I6 1382 aa11.81□□□□□ -0.52
HERPUD1-206ENST00000563343 TRIM37O94972 964 aa11.81□□□□□ -0.52
HERPUD1-206ENST00000563343 SIRT1Q96EB6 747 aa11.81□□□□□ -0.52
HERPUD1-206ENST00000563343 ANKARQ7Z5J8 1434 aa11.79□□□□□ -0.52
HERPUD1-206ENST00000563343 MYOM1P52179 1685 aa11.79□□□□□ -0.52
HERPUD1-206ENST00000563343 PARP4Q9UKK3 1724 aaKnown RBP11.79□□□□□ -0.52
HERPUD1-206ENST00000563343 SPATA31A1Q5TZJ5 1347 aa11.79□□□□□ -0.52
HERPUD1-206ENST00000563343 NRKQ7Z2Y5 1582 aa11.79□□□□□ -0.52
HERPUD1-206ENST00000563343 PEAK1Q9H792 1746 aa11.78□□□□□ -0.52
HERPUD1-206ENST00000563343 LMOD2Q6P5Q4 547 aa11.78□□□□□ -0.52
HERPUD1-206ENST00000563343 FAM196AQ6ZSG2 479 aa11.78□□□□□ -0.52
HERPUD1-206ENST00000563343 ANKRD30BQ9BXX2 1392 aa11.78□□□□□ -0.52
HERPUD1-206ENST00000563343 APBA3O96018 575 aa11.77□□□□□ -0.53
HERPUD1-206ENST00000563343 DLC1Q96QB1 1528 aa11.76□□□□□ -0.53
HERPUD1-206ENST00000563343 LMO7Q8WWI1 1683 aa11.76□□□□□ -0.53
HERPUD1-206ENST00000563343 KCNQ2O43526 872 aa11.76□□□□□ -0.53
HERPUD1-206ENST00000563343 PMFBP1Q8TBY8 1022 aa11.76□□□□□ -0.53
HERPUD1-206ENST00000563343 SPON1Q9HCB6 807 aa11.76□□□□□ -0.53
HERPUD1-206ENST00000563343 UTRNP46939 3433 aa11.75□□□□□ -0.53
HERPUD1-206ENST00000563343 ZNF784Q8NCA9 323 aaPredicted RBP11.75□□□□□ -0.53
HERPUD1-206ENST00000563343 ITSN1Q15811 1721 aa11.74□□□□□ -0.53
HERPUD1-206ENST00000563343 IFFO2Q5TF58 517 aa11.74□□□□□ -0.53
HERPUD1-206ENST00000563343 ACIN1Q9UKV3 1341 aaKnown RBP11.74□□□□□ -0.53
HERPUD1-206ENST00000563343 NBPF8Q3BBV2 869 aa11.73□□□□□ -0.53
HERPUD1-206ENST00000563343 NBPF14Q5TI25 921 aa11.73□□□□□ -0.53
HERPUD1-206ENST00000563343 WNK3Q9BYP7 1800 aa11.73□□□□□ -0.53
HERPUD1-206ENST00000563343 PRR36Q9H6K5 1346 aa11.73□□□□□ -0.53
HERPUD1-206ENST00000563343 C14orf93Q9H972 538 aaKnown RBP11.73□□□□□ -0.53
HERPUD1-206ENST00000563343 TULP4Q9NRJ4 1543 aa11.73□□□□□ -0.53
HERPUD1-206ENST00000563343 PPP1R1BQ9UD71 204 aaPredicted RBP11.73□□□□□ -0.53
HERPUD1-206ENST00000563343 KIAA0232Q92628 1395 aa11.72□□□□□ -0.53
HERPUD1-206ENST00000563343 RGL3Q3MIN7 710 aa11.72□□□□□ -0.53
HERPUD1-206ENST00000563343 SLC4A1APQ9BWU0 796 aaKnown RBP11.72□□□□□ -0.53
HERPUD1-206ENST00000563343 ADGRB1O14514 1584 aa11.71□□□□□ -0.53
HERPUD1-206ENST00000563343 SSH2Q76I76 1423 aa11.71□□□□□ -0.53
HERPUD1-206ENST00000563343 BARGINQ6ZT62 677 aa11.71□□□□□ -0.53
HERPUD1-206ENST00000563343 PRAM1Q96QH2 718 aa11.71□□□□□ -0.53
HERPUD1-206ENST00000563343 PRDM11Q9NQV5 511 aa11.71□□□□□ -0.53
HERPUD1-206ENST00000563343 LRRC37A3O60309 1634 aa11.71□□□□□ -0.54
HERPUD1-206ENST00000563343 GPRASP1Q5JY77 1395 aa11.7□□□□□ -0.54
HERPUD1-206ENST00000563343 DHX57Q6P158 1386 aaKnown RBP11.7□□□□□ -0.54
HERPUD1-206ENST00000563343 DCAF8L1A6NGE4 600 aa11.7□□□□□ -0.54
HERPUD1-206ENST00000563343 TOPAZ1Q8N9V7 1692 aa11.69□□□□□ -0.54
HERPUD1-206ENST00000563343 SENP3-EIF4A1A0A087X0R7 540 aa11.69□□□□□ -0.54
HERPUD1-206ENST00000563343 SAFB2Q14151 953 aaKnown RBP eCLIP11.69□□□□□ -0.54
HERPUD1-206ENST00000563343 CHRNA2Q15822 529 aa11.69□□□□□ -0.54
HERPUD1-206ENST00000563343 CFAP70Q5T0N1 1121 aa11.69□□□□□ -0.54
HERPUD1-206ENST00000563343 PDGFDQ9GZP0 370 aaPredicted RBP11.69□□□□□ -0.54
HERPUD1-206ENST00000563343 ANO8Q9HCE9 1232 aaPredicted RBP11.69□□□□□ -0.54
HERPUD1-206ENST00000563343 AKAP12Q02952 1782 aa11.69□□□□□ -0.54
HERPUD1-206ENST00000563343 C1QTNF8P60827 252 aa11.68□□□□□ -0.54
HERPUD1-206ENST00000563343 STRN4Q9NRL3 753 aa11.68□□□□□ -0.54
HERPUD1-206ENST00000563343 ATP7BP35670 1465 aa11.68□□□□□ -0.54
HERPUD1-206ENST00000563343 ARHGEF28Q8N1W1 1705 aaKnown RBP11.67□□□□□ -0.54
HERPUD1-206ENST00000563343 PTGER2P43116 358 aa11.67□□□□□ -0.54
HERPUD1-206ENST00000563343 PDE3BQ13370 1112 aa11.67□□□□□ -0.54
HERPUD1-206ENST00000563343 CEP350Q5VT06 3117 aa11.66□□□□□ -0.54
HERPUD1-206ENST00000563343 USP35Q9P2H5 1018 aa11.66□□□□□ -0.54
HERPUD1-206ENST00000563343 EIF3AQ14152 1382 aaKnown RBP11.66□□□□□ -0.54
HERPUD1-206ENST00000563343 PLSCR1O15162 318 aa11.65□□□□□ -0.54
HERPUD1-206ENST00000563343 LARP1Q6PKG0 1096 aaKnown RBP11.65□□□□□ -0.54
HERPUD1-206ENST00000563343 COL24A1Q17RW2 1714 aa11.64□□□□□ -0.55
HERPUD1-206ENST00000563343 OVOS2A0A0G2JMS6 1433 aa11.64□□□□□ -0.55
HERPUD1-206ENST00000563343 OVOS2A0A0J9YW53 1432 aa11.64□□□□□ -0.55
HERPUD1-206ENST00000563343 OVOS2Q6IE36 1432 aa11.64□□□□□ -0.55
HERPUD1-206ENST00000563343 ZC3H6P61129 1189 aaKnown RBP11.64□□□□□ -0.55
HERPUD1-206ENST00000563343 PROM2Q8N271 834 aa11.64□□□□□ -0.55
HERPUD1-206ENST00000563343 TCP11L2Q8N4U5 519 aa11.64□□□□□ -0.55
HERPUD1-206ENST00000563343 HIRIP3Q9BW71 556 aaPredicted RBP11.64□□□□□ -0.55
HERPUD1-206ENST00000563343 COL18A1P39060 1754 aa11.64□□□□□ -0.55
HERPUD1-206ENST00000563343 COL5A2P05997 1499 aaPredicted RBP11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 SHANK3Q9BYB0 1731 aa11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 WASLO00401 505 aaPredicted RBP11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 PAK3O75914 559 aaPredicted RBP11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 PTF1AQ7RTS3 328 aa11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 PPARGC1BQ86YN6 1023 aaKnown RBP11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 SGIP1Q9BQI5 828 aa11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 POGKQ9P215 609 aa11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 THRAP3Q9Y2W1 955 aaKnown RBP11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 CPDO75976 1380 aa11.63□□□□□ -0.55
HERPUD1-206ENST00000563343 MINK1Q8N4C8 1332 aaPredicted RBP11.62□□□□□ -0.55
HERPUD1-206ENST00000563343 PAPPAQ13219 1627 aa11.62□□□□□ -0.55
HERPUD1-206ENST00000563343 ZBTB7AO95365 584 aa11.62□□□□□ -0.55
HERPUD1-206ENST00000563343 SYT17Q9BSW7 474 aa11.62□□□□□ -0.55
HERPUD1-206ENST00000563343 RGPD5Q99666 1765 aa11.62□□□□□ -0.55
HERPUD1-206ENST00000563343 NGDNQ8NEJ9 315 aaKnown RBP11.61□□□□□ -0.55
HERPUD1-206ENST00000563343 FHDC1Q9C0D6 1143 aaPredicted RBP11.61□□□□□ -0.55
HERPUD1-206ENST00000563343 POLR3AO14802 1390 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 171.7 ms